Gavia stellata (red-throated loon): 104251266
Help
Entry
104251266 CDS
T08384
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104251266 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gste03400
]
104251266 (LIG3)
Enzymes [BR:
gste01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104251266 (LIG3)
DNA repair and recombination proteins [BR:
gste03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104251266 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
aRib
Motif
Other DBs
NCBI-GeneID:
104251266
NCBI-ProteinID:
XP_009808744
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCMFEKL
DKARATTKKIEDITELEGWEELQDGEKELINKHISEANSKAANTPKKKVIVQAKLTATGQ
ITTKDPLALVTPSPKKFSGFTAKPKNSEDVSANSSHKSSLSAKKCDPKHKDCLLREFRKL
CAMVAEKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTIKLLLPGVIKIVYNLNDKQIVKL
FSRIFNCSQEEMVRDLEQGDVSETVRLFFEQSKSCPPAAKSLLTIQEVDEFLIQLSKLTK
EDDQQSVLQHITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQD
VVERVLKNQQEAEKMPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKY
DGERVQVHKNGDNFNYFSRSLKPVLPHKVAHFKDFIPQAFPGGQSMILDSEVLLIDNKTG
KPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNRIL
FSEMKHVTKASDLADMITRVIREGLEGLVLKDTKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHDDATLARLQTELDMVK
ISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWKTATNLQQLKELYQLSKEKADFNVVAGEEDESTAGSSGENEGNSRSSTPHSTI
KTPPSKSPAKAQKPEESKAVIGSPQKSEEKRGEKRKASEMDDNGNKALLDIFTGVKLYLS
PSVKDFDKIRRYFIAYDGDLVPEFDTASATHVIGDIDENPGAKRVSPDWIWKCIRKRRLV
APC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcagaggtactgcgtagactatgccaagcgtggcacggcaggctgcaagaag
tgcaaggagaagatcgtgaaaggaatggtgcgcattggaaagattgttcccaatcctttc
acggagtctggcggggacatgaaggagtggtaccatgtgaagtgcatgtttgagaagcta
gataaggcccgggccaccaccaagaaaattgaagacatcacagagttggaaggatgggaa
gagctacaagatggggagaaagaattaatcaacaagcatatctcagaagctaattccaag
gctgcaaatacaccgaagaaaaaagtgatagtccaagctaagctcactgccacaggacag
ataactacaaaagatccattagctctcgtcactccgtcaccaaagaagttctctggcttc
acagccaagccaaagaattcggaagatgtctctgcaaactcttcccacaagtctagccta
tctgcaaaaaaatgtgatccgaagcacaaagactgcttgctgcgagagttcaggaagctc
tgtgccatggttgctgaaaagcctagctataacgtgaaaacgcagatcatccaggatttt
ctgaagaagggatctggaggagatggttttcatggtgacgtatacctgaccattaagctg
ctgttaccaggcgtcattaaaattgtttacaacttgaacgataagcagattgtaaagctg
tttagtaggatttttaactgcagccaagaagaaatggtccgggacctggaacagggagat
gtttccgagaccgtacgcctcttctttgaacagagcaagtcttgtcctccagcagccaaa
agtctcctgaccatccaagaggtagatgaattcctaatccagctatcaaagcttactaag
gaagatgaccagcaaagtgtgctgcaacatatcactcgcagatgtacgggcaacgacctg
aaatgcatcatcaggctaattaagcacgacttgaaaatgaacgctggagcaaagcatgtg
ttggatgctttggatcccaatgcttacgaggcgttcaaagcatcacgcaacctccaggat
gtggtagagcgagtcctgaagaaccagcaagaggctgagaagatgccaggtctgaagcga
accctcagtgtgcaggcctctctgatgaccccggttcagcccatgctggctgaagcctgc
aagtcaattgagtatgcgatgaagaagtgcccaaatggcatgtacgcagagatcaaatat
gatggggagcgtgtgcaggtccataaaaatggagataatttcaactacttcagcagaagc
ctcaaacctgtcctccctcacaaagtagcccattttaaggacttcatcccccaggctttc
cctggtgggcaaagtatgatcctggattcagaagttcttctgattgataacaaaactggc
aagccacttccttttgggactcttggtgtgcacaagaaagctgctttccaagacgccaac
gtttgcttgtttgtgtttgactgcatctatttcaatgacatcagcctgatggacaggcct
ctgtgtgaacgtcgtaagtttctccacgataacatggtggaaatcccaaaccggatcctc
ttctcggagatgaagcatgtcacaaaagcttcagatctggcagatatgatcacccgagtc
atccgtgagggattggaagggctggtgttgaaagatacaaagggtaattatgaaccagga
aaacgacactggctgaaagtgaaaaaggactacctgaatgagggtgcaatggctgacaca
gcagacctggtggtgctgggagctttctatggacaaggcagtaaaggtgggatgatgtcc
atcttcctcatgggctgttacgatcccaagagtgagaagtggtgcactgtgaccaagtgt
tccggtggccatgatgatgccaccttggcgcgtctgcaaacagagctggatatggtgaag
atcagcaaggatcctagtaaaattccaaggtggctaaaaatcaacaaaatctactaccca
gacttcattgtcccagatccaaagaaagccccagtgtgggagatcaccggggctgaattc
tctaaagctgaagcccacactgcagatgggatctccattcgcttccctcgctgcacccgc
attcgagatgacaaagactggaagacagccaccaatctccagcagcttaaggagctgtac
caactctccaaagagaaggctgatttcaatgttgttgctggggaggaagacgagtccacg
gctggcagcagtggagagaatgagggaaattccaggtcttccacaccacacagcactatt
aaaactcccccaagcaagtcacctgcaaaagcccagaagccagaagagagcaaagcagtc
attggatcccctcaaaaatcagaggagaaacgaggggagaagcgaaaagcatctgagatg
gatgacaatggaaacaaggcactgctggacatattcactggtgtgaagctgtacctatcg
ccctctgtgaaggactttgacaaaatccggcggtactttatagcctatgatggggatctc
gtgccagagtttgacacagcctcagcaacgcatgtcataggggacattgatgagaatcct
ggtgctaagcgtgtgtctcctgactggatctggaaatgcatccggaagcggagactggta
gccccatgctag
DBGET
integrated database retrieval system
