Gavia stellata (red-throated loon): 104251693
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Entry
104251693 CDS
T08384
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
gste
Gavia stellata (red-throated loon)
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gste03019
]
104251693 (DDX60)
Enzymes [BR:
gste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104251693 (DDX60)
Messenger RNA biogenesis [BR:
gste03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104251693 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
TAtT
Motif
Other DBs
NCBI-GeneID:
104251693
NCBI-ProteinID:
XP_009805893
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
VCQTVRLLKQLWPEGSDIRRVVCVLSCAVGLKIYNIMLENANTSVGAKTEQSARGRSKPL
SPEEAADLCRMQCLTVAFLLHMPLSQRAQIRIMKSCWTKQVLPLVKMQQLCMHFALTQLS
DTKHWKLDLTYLPDLNDDSLLINLAHYYEVEYNKGLEFKKELGKEMENEYQCLWDTITKL
SVKYSFGDAFPIRKTSQLFLEQEQTLFRDYEEEIPNIGLISMKSDLVEEYAGDVLKDLPV
LECNDPAVTSLTKYKEFNELHHWHSGRPLTEEYERVWCNADAKSKDPEERRQIQKLQTFR
HFYGSTLENSSSKLIVHQANMSGNTNAVVKKTQKKHKSKAETIAEENNRRLKAKEEKKEQ
EQWKALCKPTEKEIKANLTVGINKLDKFLKTLKSKSVKFSVEMTGLSTCVEVWKEHCIEQ
GNTSKDLSKAVQVMRRIHILLEKYQDLLEKPHLQKLTTYLRLLGFKNLACSLSGQTGKRN
DQNISNYAIEVGPARFQLQYMDYYLLREERNDPDPRVQSFIPDTWQRELLDAVDNNESAV
IVAPTSSGKTYASYYCMEKVLKTSNDGVVVYVAPTKALVNQVVGTIYSRFTKKLPDGLAV
CGVFTRDYRNDVMNSQILVTVPQCLEILMLSPRCQKWTKRIQYVIFDEVHCLGGEIGAEV
WEHLLVTIRCPFLALSATVSNPEHLTEWLQSVKRYWQRAENTIEGSSTNSEKNFTRKCKV
KYKVQAQKKSYRVRLVLYEERYNDLEKYVCSLKGSDFIIEHCHPCAALTVNHIENYGIPS
DLSLSPRESIQLYDTMVKVWQEWPRAQELDPEEFVSFKNKVVIKKADVRKYEQELKKELS
KWIVLGQRQKVNELLEHLKPKPVDCSEQEKWKHFANFVDKLHEMDKLPAIFFIFNVDSVE
CAAKNVFFNLLKKQKSEQDPNTEREKEHLKNELRKVKKMLIKFNPQDTKKLSSSKMENMV
LLLTTKQQLEKRLKRLTAIPSVCTYADPKAVDEDTLRKFFHRLRFERRGYLQQMMALRGI
GYHHGSMTAKERQVVEMLFRLGYIKVVTATSTLALGINMPCKSVVFAEDSVFLDALNYRQ
MSGRAGRRGQDMIGNVFFYDIPLPKVERLIKSNVPQLKGQFPLTVSLILRLMLLAAKADD
KADARAKALSVLKHSLMSFRKDRYAEILKIYFMFSLQFLLKEGYLDQEGNPTGFAGLVTH
LYYYEPSNFVLVSFLVKGLFHKLCQPIKGSTVFSEDVLEKLVLILANLFGRKYLPACSMK
YERTFCQSK
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
gtttgccagactgtccgtcttttgaaacaactgtggcctgaaggatctgacattcggcgt
gtggtttgtgttctttcttgtgccgtgggattaaaaatatacaacatcatgttggaaaat
gcaaatacttctgtaggagcaaagacagagcaatcagcaagaggaagaagtaaaccccta
tctccagaagaagcagctgacctctgtagaatgcaatgtcttacagtggcttttcttctt
catatgcctctttcacagagagctcagattaggatcatgaaatcctgctggactaagcaa
gttttaccattagtaaaaatgcaacagttgtgtatgcattttgctctgacacagctaagt
gatacaaaacattggaaattggatttaacttacctgcctgacttaaatgatgattcactg
ctcataaatcttgcacattactatgaggttgagtacaataaaggattagagttcaaaaag
gaattggggaaagaaatggagaatgagtaccaatgtttatgggacactataacaaaattg
tctgtgaaatacagttttggagatgctttcccaatacgaaagacctcccaactatttctt
gaacaggaacagacattatttagagactatgaagaagaaattcctaatattggactaatc
tcaatgaaatctgatcttgttgaagagtatgctggagatgttttgaaagacctacctgtt
ttagaatgcaatgatcctgcagttacttcacttactaaatacaaggaatttaatgagctt
catcactggcattctggcagacctttgactgaggaatatgagcgagtatggtgtaatgct
gatgcaaaatctaaagatccagaagaaagaagacaaatacaaaagttacagacttttcgt
catttttatggaagcaccttggaaaacagctcttcaaaacttattgtacatcaagcgaat
atgtcggggaatactaatgctgtggtcaaaaagacacaaaaaaagcataaaagtaaagcc
gaaacaattgcagaggaaaacaacaggcgactaaaagctaaagaagaaaagaaagaacag
gaacaatggaaagctttgtgtaaaccaactgagaaggaaataaaagcaaatctgactgtt
ggaataaataaattggacaagtttctcaagacccttaaaagtaaatctgtgaagttcagt
gtagaaatgacaggactgtctacctgtgtagaagtgtggaaggagcactgcatagagcaa
ggtaacacatctaaagatttaagcaaagctgttcaagtcatgaggagaattcatatcctc
cttgaaaaatatcaagatctcttggagaaaccacatctacaaaagctgactacatatcta
agacttcttggattcaagaatttggcatgctctctatctggccagacaggaaaacgtaat
gatcagaatataagcaactatgctatcgaagtgggtccagctcgctttcagctacaatac
atggattattacttgctcagagaagagagaaatgatccagatccccgagtgcaatctttc
ataccagacacatggcagcgagaacttcttgatgctgtagataataatgagtctgcagtg
attgtcgcccccacttcctcaggaaaaacatatgcatcatactattgcatggaaaaagtt
ctgaaaacaagcaatgatggagtagttgtgtatgttgctcctacaaaggcccttgtaaac
caagtggtgggaactatatacagtcgattcaccaagaaacttccggatggattggcagtg
tgtggagtcttcacacgagattatcgcaatgatgtcatgaattctcagatactagtgact
gtgcctcagtgtttagaaatcttgatgctgtctcctcgttgccagaaatggaccaaacgg
atacaatatgttatatttgatgaggtccattgtcttggtggtgaaattggagcagaggtt
tgggagcatcttctggtaacaattcggtgtccgtttttggcactctctgctactgtcagt
aacccggaacacctaactgagtggttacaatctgtgaaaaggtattggcaacgtgctgag
aatacaatagaaggaagctctacaaactctgaaaagaactttacaagaaaatgtaaagtg
aaatataaagtacaagcacaaaagaaatcatatcgtgttagactagtcttgtacgaagaa
agatacaatgatttggaaaagtatgtgtgttctctaaagggcagtgattttatcattgaa
cattgtcatccatgtgctgcattaacagtcaatcatattgagaactatggtattccttca
gatctttctctgtctccacgagagagcatccagctttatgacacaatggtgaaagtctgg
caagagtggccaagggcacaggagctagatcctgaagagtttgtctctttcaagaataaa
gtagtaataaaaaaggcagatgtgaggaaatatgaacaggaactgaagaaagagctaagc
aaatggattgtgcttggccaaagacagaaggtgaatgagctactggagcaccttaagcca
aaacctgtggattgctcagaacaggaaaagtggaagcattttgcaaactttgttgataaa
ttacatgagatggataagttgcctgccatattttttatatttaacgtggattcagtagaa
tgtgcagccaagaatgtattcttcaatttgctgaaaaagcaaaaaagtgaacaagaccct
aataccgagagggaaaaagaacatttaaagaatgaactaagaaaagtgaaaaaaatgcta
ataaaattcaaccctcaggatactaaaaagttgagctccagtaaaatggaaaacatggta
cttcttttgactacaaaacaacagttagaaaaaagacttaaaaggctaactgctatccct
tctgtgtgtacttacgctgatcctaaagcagtggatgaagatactttgaggaagtttttt
catcgacttaggtttgagagaagaggttatctgcagcaaatgatggcactgaggggcatt
gggtatcatcacggatctatgaccgccaaggaaagacaagtagtggagatgcttttcagg
ctgggatatatcaaggtagtcacagctacttcaacacttgctctaggaatcaacatgcca
tgtaaatctgttgtctttgctgaagattctgtctttttagatgccctaaattacagacag
atgtcaggacgtgctggaagacggggacaagatatgattggaaatgtgttcttctacgat
atcccactgcccaaagttgaaagacttatcaaatccaacgtacctcagttgaaaggccag
tttcctctgactgtttccttaatattgagactcatgctgttggctgcgaaggctgatgac
aaagcagatgccagagcaaaggcattgtcagtgttgaagcactcactgatgtcgttcaga
aaagatagatatgctgaaatattaaaaatttattttatgttttccttgcaatttcttctc
aaagagggctacttggatcaagaaggtaaccccacaggatttgctgggcttgtgacacac
ttgtactattacgaaccttcaaattttgttttagtgagctttcttgtgaaaggtttattc
cacaaattgtgccagccaattaaaggctcaactgttttttcagaagatgtcctggaaaag
ctagtgctcattctagcaaacctatttggcagaaaatatcttccagcctgctcaatgaaa
tatgaacgcacattttgccagtcaaag
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