Gavia stellata (red-throated loon): 104253324
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Entry
104253324 CDS
T08384
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste04510
Focal adhesion
gste04512
ECM-receptor interaction
gste04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104253324 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104253324 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104253324 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gste04147
]
104253324 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
gste00536
]
104253324 (COL4A4)
Exosome [BR:
gste04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104253324 (COL4A4)
Glycosaminoglycan binding proteins [BR:
gste00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104253324 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104253324
NCBI-ProteinID:
XP_009806029
LinkDB
All DBs
Position
Unknown
AA seq
1674 aa
AA seq
DB search
GGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLQGPIGAPGFTGPEGLPGAKGERGA
VGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGLPGLDGCNGTTGSPGVPGSDGF
PGLPGLPGRPGPKGLKGEPVFAQGGLKGMKGENGLPGLDGISGPKGFPGPVGSAGPIGLP
GLQGPMGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPKGKQGEK
GEPGPQGLPGDKGLPGVPGFEGVGEKGEKGVPGLPGGRGLLGLDGSDGIPGRKGHPGIPG
YPGLDGIEGMKGELGDIGPPGPPIVIDREGVVISGAPGDPGNPGIPGPPGDEGISGLPGL
PGAPGFPGLERDGMGPGGSPGIPGVKGEVGEPGRATIGLPGTPGSDGLPGLPGAPGLPGS
PRPSFPPDTILDGRAGPPGEPGQRGLPGALGPKGYKGEAGDCACDGGVTRAGPKGISGPP
GPSGSPGVPGIKGIGGDPGTVGAPGLRGPPALAGQQGLPGLKGEKGDSSYATGRGARGDR
GATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKGHRGETGSPG
VGYPGPSGVRGPPGDPGMDGFPGQAGLPGPPGITLPCIVPGAYGPPGTPGFPGLPGPKGS
KGFPGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGEQGSQGLPGLDGTDGLPGKMGA
SGLAGTKGTPGDVFGAESGALGEHGRPGLPGDKGLTGDLGFPGPKGLDGRPGLVGIKGEQ
GNPGYSGVPGLRGPPGPGGPFGVKGKPGLLGSVGLAGAPGCQGLPGVKGLTGDVGPQGPA
GMKGFPGLDGAPGSPGERGFLGPPGPFGEDGHPGFSGPKGEKGSSGLLGFPGMPGLPGVP
GVNGFKGTPGTAGGKGSPGVVGLQGQKGDRGDVGPPGLPVLGPLEQALQFKGDKGDPGLA
GLGGFPGPRGDKGIPGSRGQPGLPGPIGSASKERGLHGDPGFPGPPGQPGLPGQKGTHGI
IGFPGYPLFQGSDGITGALGFPGPIGLPGSKGDQGESVGVPGSAGAKGERGDPGFPGERG
REGLKGEPGYPGNTGVNGLKGSPGDLGQEGPAGIPGNAGLRGIPGPPGPPGQPGSVGFPG
ARGTAGPKGSHGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGPAGLPGPKGEEGSPALGRG
AVGFPGPKGSSGDMGPPGPVGLPGLPGTPGASLPSDTRGRPGDAGHPGTDGSSGLAGPPG
PRGPPGPASDQGDTGNPGFPGVLGLRGIKGDVGPTGPIGLPGASGFKGVRGEPGLMGMPG
KDGPPGDPGYPGLKGEMGHRGLPGQQGAPGITPQPEDITAPAGLPGLPGIDGVPGFDGDP
GFQGPAGKPGTKGLPGRPGLKGRDGLPGSPGIVGDPGPSGAPGPHGFEGVAGKPGSLGLP
GMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVEGQEKAHNQDLGFAGSCLP
RFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSVQIPQYISRCSVCEAPSQA
VAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECN
GARGTCHYFANKYSFWLTTIEQSQQFVSAPASETLKAGQLRTRVSRCQVCMKNL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
ggtggaaagaagtcttacagtgggccgtgtgggggccgcgattgcagcgctggatgcaaa
tgttttccagagaagggtgcacggggtcgaccaggaccgattgggcttcaaggaccaata
ggtgcacctggatttactggcccagaaggtttgccgggagcaaaaggtgagagaggagca
gtgggcccccctggcccggctggacagaaaggcgacaagggcccgatgggagttccagga
tttcaaggcatcaacgggatcccaggtcaccctggacaatccggacctagaggtctgcct
ggcctcgatggctgcaatggtaccactgggagtcctggcgttcctggatcagatgggttt
cctggcctacctgggctgcctggtcgtcctggcccaaaaggccttaaaggagaacctgtt
tttgctcaaggcggtcttaaaggaatgaagggagaaaatggtcttcctggactggatgga
atttctggcccaaaaggttttccaggtccagtaggttctgcaggccctataggattacca
ggtttgcagggtccaatgggtccccctgggccaccaggtccaaaaggtaacatgggatta
ggctttcaaggagagaaaggagaaaagggcgatgtagggctgcctggccctccaggtccc
ccaccatccactggaatactggaattcatgggatttccaaaagggaagcaaggagaaaag
ggtgagccaggccctcaaggactccctggagacaaaggattgcctggtgtgccgggcttt
gaaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccgggtggcaggggtctt
ttgggactggatggatctgatgggattccagggagaaagggtcatccaggtattccaggc
tatccaggactggatggaattgaaggcatgaagggtgaattaggtgacatcggtccccca
ggccctcctatcgttattgacagggaaggtgtagtcatttcaggtgccccgggtgaccct
ggaaacccaggaatacctggtcctccaggagatgaagggatcagtggtttaccaggcctt
ccaggagctccagggtttccaggcctggagagagatggaatgggccctggagggtctcca
ggtattccaggtgtgaagggtgaagtgggagaaccaggaagagcaacaattggattacca
ggaactcccggcagcgatggtttaccaggtctgccaggagcaccaggattgcctggttca
ccacgcccttcattcccccccgacacgatcctcgatggaagggctgggcccccaggggag
cctggacaaagagggctgccaggagctttgggtccaaaggggtacaaaggagaggcaggt
gattgtgcttgtgatggaggagttacaagagctggtccaaaaggcatctcaggtccacca
ggtccgtcgggaagccctggtgtgcctgggattaagggcattggtggagacccaggcact
gtaggcgcaccaggactgcgaggccctccggctttggctggtcagcaaggtcttccaggc
cttaagggagaaaaaggggattcatcctatgcaacaggcagaggtgctcgtggggaccgt
ggtgcgacagcacccagaggaccttcaggcatcccaggaacccctggcagggatggactt
ccaggcttgccaggcccaccaggccctccaggagatggtgggctaggtttcccaggtgaa
aaaggactgccaggattacctggctccaagggccatcgtggagaaactggttctcctggc
gttggatatccaggtcctagtggagttcgtgggccaccaggtgacccaggaatggatggg
tttccaggacaagcaggtcttccaggccctccaggtatcaccttgccctgcatagttcct
ggagcatatgggcccccagggactcccggctttccaggattgccaggtcccaaaggcagc
aaaggctttcctggcattccaggccaacctggattacatgggtcaaaaggacagccaggt
tctccaggaataataggcttgcaaggggaacctggcttccctggacctcgaggagagcaa
gggtcccaaggacttccaggactggatggaacagatggtttgcccgggaaaatgggtgct
tcaggcttagctggaacgaaaggaacgcctggagatgtatttggtgctgagagtggagcc
ctgggagagcatggccgacctggactcccaggtgataaagggcttacaggtgatcttgga
tttccaggaccaaaagggttagacggaagaccaggcctcgtaggtattaaaggcgaacag
ggtaatccaggatattcgggtgtccctggattgcggggacctcccggtcctggaggtcct
tttggcgtcaagggaaaaccaggactgttggggtcagttggccttgcaggagcaccaggc
tgtcaaggacttcctggagtcaaaggcttgactggggatgtaggtccacaaggccctgct
ggtatgaaaggcttcccaggtcttgatggtgctccaggatctcctggggaaagaggattc
ttagggccacctgggccttttggtgaagatggacatccaggtttctcggggccaaaaggc
gagaaagggtcttctggcctgcttggtttccctggcatgccaggcctgcctggtgtccct
ggggtgaacgggtttaaaggaactcctggcacagctggaggaaaaggaagccctggagtt
gtgggactccaaggtcagaaaggtgacagaggtgatgtaggtccacctggtcttcctgtt
cttgggcctctagaacaggcactgcaattcaaaggagacaaaggagatcctggattagct
ggacttggaggattccctggacctagaggtgataaaggaatcccaggaagccgtggacag
cctggtctccctggtccaattggatcagcaagcaaagagagaggtcttcatggtgaccca
ggcttccctggtccacctggacaacctgggctgccaggacagaagggcacacatggtatc
ataggatttccaggataccctctttttcagggttcagatggtatcacaggggcacttgga
ttcccaggacctattggcctccctggttcaaagggtgaccagggagagtctgttggtgtt
cctggcagtgctggagcaaaaggagagcgaggggacccggggttcccaggagagagaggg
agagaaggactcaagggtgaaccaggctacccaggaaacactggggtgaatggactcaaa
ggcagcccaggagaccttggccaagaaggaccagcaggaatccctggaaatgctgggctg
agaggaatccctgggccaccaggacctccagggcagccaggatctgttggattccctgga
gctcgtggaacagcaggacctaaagggtctcatggatttccgggtttaaatggtctgaat
ggcttgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctggactgaaa
ggccctgcaggtctcccaggtccaaagggtgaagaaggttctccagccttgggtagagga
gctgtaggattccctggaccaaaaggctcatcaggagacatgggtccccctggtcctgtg
ggactgcccggcttgccaggaacacctggagcttctcttccttctgatacacgtgggaga
cctggggatgctggccatccaggaactgatgggagttcaggtcttgcaggtcctccagga
ccacgagggccccctggcccagcttctgaccaaggtgacacaggcaatccaggtttccct
ggtgttcttggcttgcgaggcattaagggtgacgtgggacccactggtccaattggactc
cctggagcatctggattcaaaggtgtaagaggggagcctggccttatggggatgccaggt
aaagatgggcctccgggggatcctggttaccctgggctgaaaggtgaaatgggccatcga
ggtctccctggccaacaaggggctccaggtataaccccacagccagaagacatcacagcc
cctgcaggcttacctggtctgccaggaatcgatggtgtccctggctttgatggagatcct
ggattccagggcccagctggaaaaccaggtacaaagggtctgccagggagacctggtttg
aaaggacgtgatggtttacctggatcacctggcatagttggggatccaggaccttcgggt
gcaccaggaccacatggatttgaaggtgttgcaggaaagccgggctcacttggtttgccg
ggaatgcctggtcggagcgtgggcgttggatacactttagtgaagcacagtcagtcagac
caaatcccaccttgtcccataggaatgaataagctctgggatggctacagcttattgtac
gtggagggacaggagaaggcacacaaccaggatcttggttttgctggctcctgtttgcct
cgcttcagcaccatgccttttatttactgcaacatcaatgaagtgtgctactacgccagc
cgaaatgacaagtcctactggctctccaccactgctcctatccccatgatgccagtggac
agcgttcagatcccacagtacatcagtcgttgctcagtatgtgaagcaccttcccaggct
gtggccgtgcacagccaggacatcaccatcccacagtgtccccttggttggcgcagccta
tggataggatactccttccttatgcatactgcggctggtgcagaaggtggaggtcagtcc
cttgtctcacctggttcttgcctggaggatttccgtgctactccattcattgaatgcaac
ggtgctaggggaacgtgccactacttcgcaaacaagtacagcttctggctgacgaccatt
gaacagtcgcagcagtttgtcagtgctcctgcctcagaaactctgaaagcaggacagctt
cgaacaagggtcagccgttgccaggtgtgcatgaagaacttgtag
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integrated database retrieval system
