Gavia stellata (red-throated loon): 104253324
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Entry
104253324 CDS
T08384
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste04382
Cornified envelope formation
gste04510
Focal adhesion
gste04512
ECM-receptor interaction
gste04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104253324 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104253324 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104253324 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104253324 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gste04147
]
104253324 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
gste00536
]
104253324 (COL4A4)
Exosome [BR:
gste04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104253324 (COL4A4)
Glycosaminoglycan binding proteins [BR:
gste00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104253324 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104253324
NCBI-ProteinID:
XP_009806029
LinkDB
All DBs
Position
Unknown
AA seq
1674 aa
AA seq
DB search
GGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLQGPIGAPGFTGPEGLPGAKGERGA
VGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGLPGLDGCNGTTGSPGVPGSDGF
PGLPGLPGRPGPKGLKGEPVFAQGGLKGMKGENGLPGLDGISGPKGFPGPVGSAGPIGLP
GLQGPMGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPKGKQGEK
GEPGPQGLPGDKGLPGVPGFEGVGEKGEKGVPGLPGGRGLLGLDGSDGIPGRKGHPGIPG
YPGLDGIEGMKGELGDIGPPGPPIVIDREGVVISGAPGDPGNPGIPGPPGDEGISGLPGL
PGAPGFPGLERDGMGPGGSPGIPGVKGEVGEPGRATIGLPGTPGSDGLPGLPGAPGLPGS
PRPSFPPDTILDGRAGPPGEPGQRGLPGALGPKGYKGEAGDCACDGGVTRAGPKGISGPP
GPSGSPGVPGIKGIGGDPGTVGAPGLRGPPALAGQQGLPGLKGEKGDSSYATGRGARGDR
GATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKGHRGETGSPG
VGYPGPSGVRGPPGDPGMDGFPGQAGLPGPPGITLPCIVPGAYGPPGTPGFPGLPGPKGS
KGFPGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGEQGSQGLPGLDGTDGLPGKMGA
SGLAGTKGTPGDVFGAESGALGEHGRPGLPGDKGLTGDLGFPGPKGLDGRPGLVGIKGEQ
GNPGYSGVPGLRGPPGPGGPFGVKGKPGLLGSVGLAGAPGCQGLPGVKGLTGDVGPQGPA
GMKGFPGLDGAPGSPGERGFLGPPGPFGEDGHPGFSGPKGEKGSSGLLGFPGMPGLPGVP
GVNGFKGTPGTAGGKGSPGVVGLQGQKGDRGDVGPPGLPVLGPLEQALQFKGDKGDPGLA
GLGGFPGPRGDKGIPGSRGQPGLPGPIGSASKERGLHGDPGFPGPPGQPGLPGQKGTHGI
IGFPGYPLFQGSDGITGALGFPGPIGLPGSKGDQGESVGVPGSAGAKGERGDPGFPGERG
REGLKGEPGYPGNTGVNGLKGSPGDLGQEGPAGIPGNAGLRGIPGPPGPPGQPGSVGFPG
ARGTAGPKGSHGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGPAGLPGPKGEEGSPALGRG
AVGFPGPKGSSGDMGPPGPVGLPGLPGTPGASLPSDTRGRPGDAGHPGTDGSSGLAGPPG
PRGPPGPASDQGDTGNPGFPGVLGLRGIKGDVGPTGPIGLPGASGFKGVRGEPGLMGMPG
KDGPPGDPGYPGLKGEMGHRGLPGQQGAPGITPQPEDITAPAGLPGLPGIDGVPGFDGDP
GFQGPAGKPGTKGLPGRPGLKGRDGLPGSPGIVGDPGPSGAPGPHGFEGVAGKPGSLGLP
GMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVEGQEKAHNQDLGFAGSCLP
RFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSVQIPQYISRCSVCEAPSQA
VAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECN
GARGTCHYFANKYSFWLTTIEQSQQFVSAPASETLKAGQLRTRVSRCQVCMKNL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
ggtggaaagaagtcttacagtgggccgtgtgggggccgcgattgcagcgctggatgcaaa
tgttttccagagaagggtgcacggggtcgaccaggaccgattgggcttcaaggaccaata
ggtgcacctggatttactggcccagaaggtttgccgggagcaaaaggtgagagaggagca
gtgggcccccctggcccggctggacagaaaggcgacaagggcccgatgggagttccagga
tttcaaggcatcaacgggatcccaggtcaccctggacaatccggacctagaggtctgcct
ggcctcgatggctgcaatggtaccactgggagtcctggcgttcctggatcagatgggttt
cctggcctacctgggctgcctggtcgtcctggcccaaaaggccttaaaggagaacctgtt
tttgctcaaggcggtcttaaaggaatgaagggagaaaatggtcttcctggactggatgga
atttctggcccaaaaggttttccaggtccagtaggttctgcaggccctataggattacca
ggtttgcagggtccaatgggtccccctgggccaccaggtccaaaaggtaacatgggatta
ggctttcaaggagagaaaggagaaaagggcgatgtagggctgcctggccctccaggtccc
ccaccatccactggaatactggaattcatgggatttccaaaagggaagcaaggagaaaag
ggtgagccaggccctcaaggactccctggagacaaaggattgcctggtgtgccgggcttt
gaaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccgggtggcaggggtctt
ttgggactggatggatctgatgggattccagggagaaagggtcatccaggtattccaggc
tatccaggactggatggaattgaaggcatgaagggtgaattaggtgacatcggtccccca
ggccctcctatcgttattgacagggaaggtgtagtcatttcaggtgccccgggtgaccct
ggaaacccaggaatacctggtcctccaggagatgaagggatcagtggtttaccaggcctt
ccaggagctccagggtttccaggcctggagagagatggaatgggccctggagggtctcca
ggtattccaggtgtgaagggtgaagtgggagaaccaggaagagcaacaattggattacca
ggaactcccggcagcgatggtttaccaggtctgccaggagcaccaggattgcctggttca
ccacgcccttcattcccccccgacacgatcctcgatggaagggctgggcccccaggggag
cctggacaaagagggctgccaggagctttgggtccaaaggggtacaaaggagaggcaggt
gattgtgcttgtgatggaggagttacaagagctggtccaaaaggcatctcaggtccacca
ggtccgtcgggaagccctggtgtgcctgggattaagggcattggtggagacccaggcact
gtaggcgcaccaggactgcgaggccctccggctttggctggtcagcaaggtcttccaggc
cttaagggagaaaaaggggattcatcctatgcaacaggcagaggtgctcgtggggaccgt
ggtgcgacagcacccagaggaccttcaggcatcccaggaacccctggcagggatggactt
ccaggcttgccaggcccaccaggccctccaggagatggtgggctaggtttcccaggtgaa
aaaggactgccaggattacctggctccaagggccatcgtggagaaactggttctcctggc
gttggatatccaggtcctagtggagttcgtgggccaccaggtgacccaggaatggatggg
tttccaggacaagcaggtcttccaggccctccaggtatcaccttgccctgcatagttcct
ggagcatatgggcccccagggactcccggctttccaggattgccaggtcccaaaggcagc
aaaggctttcctggcattccaggccaacctggattacatgggtcaaaaggacagccaggt
tctccaggaataataggcttgcaaggggaacctggcttccctggacctcgaggagagcaa
gggtcccaaggacttccaggactggatggaacagatggtttgcccgggaaaatgggtgct
tcaggcttagctggaacgaaaggaacgcctggagatgtatttggtgctgagagtggagcc
ctgggagagcatggccgacctggactcccaggtgataaagggcttacaggtgatcttgga
tttccaggaccaaaagggttagacggaagaccaggcctcgtaggtattaaaggcgaacag
ggtaatccaggatattcgggtgtccctggattgcggggacctcccggtcctggaggtcct
tttggcgtcaagggaaaaccaggactgttggggtcagttggccttgcaggagcaccaggc
tgtcaaggacttcctggagtcaaaggcttgactggggatgtaggtccacaaggccctgct
ggtatgaaaggcttcccaggtcttgatggtgctccaggatctcctggggaaagaggattc
ttagggccacctgggccttttggtgaagatggacatccaggtttctcggggccaaaaggc
gagaaagggtcttctggcctgcttggtttccctggcatgccaggcctgcctggtgtccct
ggggtgaacgggtttaaaggaactcctggcacagctggaggaaaaggaagccctggagtt
gtgggactccaaggtcagaaaggtgacagaggtgatgtaggtccacctggtcttcctgtt
cttgggcctctagaacaggcactgcaattcaaaggagacaaaggagatcctggattagct
ggacttggaggattccctggacctagaggtgataaaggaatcccaggaagccgtggacag
cctggtctccctggtccaattggatcagcaagcaaagagagaggtcttcatggtgaccca
ggcttccctggtccacctggacaacctgggctgccaggacagaagggcacacatggtatc
ataggatttccaggataccctctttttcagggttcagatggtatcacaggggcacttgga
ttcccaggacctattggcctccctggttcaaagggtgaccagggagagtctgttggtgtt
cctggcagtgctggagcaaaaggagagcgaggggacccggggttcccaggagagagaggg
agagaaggactcaagggtgaaccaggctacccaggaaacactggggtgaatggactcaaa
ggcagcccaggagaccttggccaagaaggaccagcaggaatccctggaaatgctgggctg
agaggaatccctgggccaccaggacctccagggcagccaggatctgttggattccctgga
gctcgtggaacagcaggacctaaagggtctcatggatttccgggtttaaatggtctgaat
ggcttgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctggactgaaa
ggccctgcaggtctcccaggtccaaagggtgaagaaggttctccagccttgggtagagga
gctgtaggattccctggaccaaaaggctcatcaggagacatgggtccccctggtcctgtg
ggactgcccggcttgccaggaacacctggagcttctcttccttctgatacacgtgggaga
cctggggatgctggccatccaggaactgatgggagttcaggtcttgcaggtcctccagga
ccacgagggccccctggcccagcttctgaccaaggtgacacaggcaatccaggtttccct
ggtgttcttggcttgcgaggcattaagggtgacgtgggacccactggtccaattggactc
cctggagcatctggattcaaaggtgtaagaggggagcctggccttatggggatgccaggt
aaagatgggcctccgggggatcctggttaccctgggctgaaaggtgaaatgggccatcga
ggtctccctggccaacaaggggctccaggtataaccccacagccagaagacatcacagcc
cctgcaggcttacctggtctgccaggaatcgatggtgtccctggctttgatggagatcct
ggattccagggcccagctggaaaaccaggtacaaagggtctgccagggagacctggtttg
aaaggacgtgatggtttacctggatcacctggcatagttggggatccaggaccttcgggt
gcaccaggaccacatggatttgaaggtgttgcaggaaagccgggctcacttggtttgccg
ggaatgcctggtcggagcgtgggcgttggatacactttagtgaagcacagtcagtcagac
caaatcccaccttgtcccataggaatgaataagctctgggatggctacagcttattgtac
gtggagggacaggagaaggcacacaaccaggatcttggttttgctggctcctgtttgcct
cgcttcagcaccatgccttttatttactgcaacatcaatgaagtgtgctactacgccagc
cgaaatgacaagtcctactggctctccaccactgctcctatccccatgatgccagtggac
agcgttcagatcccacagtacatcagtcgttgctcagtatgtgaagcaccttcccaggct
gtggccgtgcacagccaggacatcaccatcccacagtgtccccttggttggcgcagccta
tggataggatactccttccttatgcatactgcggctggtgcagaaggtggaggtcagtcc
cttgtctcacctggttcttgcctggaggatttccgtgctactccattcattgaatgcaac
ggtgctaggggaacgtgccactacttcgcaaacaagtacagcttctggctgacgaccatt
gaacagtcgcagcagtttgtcagtgctcctgcctcagaaactctgaaagcaggacagctt
cgaacaagggtcagccgttgccaggtgtgcatgaagaacttgtag
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integrated database retrieval system
