Gavia stellata (red-throated loon): 104253560
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Entry
104253560 CDS
T08384
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104253560 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gste01009
]
104253560 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gste04515
]
104253560 (PCDH20)
Protein phosphatases and associated proteins [BR:
gste01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104253560 (PCDH20)
Cell adhesion molecules [BR:
gste04515
]
Cadherins
Protocadherins
104253560 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
ORF45
Motif
Other DBs
NCBI-GeneID:
104253560
NCBI-ProteinID:
XP_009805361
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
GQYVQLDNRSGELHTSAVEIDREALCVESSGAAVFGGAGAVSSSSSSPSSESCLLLLDVL
VLPQEYFRLVKVKIAIRDVNDNAPHFPVPHIRLSVPENAPVNTRLAIEHPALDPDVGTNG
VQTYRLQDNYGVFTLDVEENESGERTPYLIVMGALDREMREEYVTVIVAEDGGTPPLVGS
ATLTIGINDINDNCPQFSDLQLNVTLYGNSSLGTHVATVHAVDMDLGSNAQITYSYSQKV
PQPSRDLFHLDESTGTITLSSKVDGDTPRVHRLIILGNGPGCIPAVITVLVTIIKVMMRP
PEVVPRFIANEAEGVVYLKELEPVNTPIAFFTIKDPDEKYKVNCYLDGDGPFRLSPYKPY
NNEYLLETTKPLDYEAQQLYEISVVAWNSEGFRVNKIIKVQILDDNDNSPVFSQQLIELS
IEENNVPNAFLTKLHATDADSGERGQVSYFLGPDAPSYFYLDKTSGVLTVSTQLDREEKE
KYRYTVKAVDSGFPPRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVISV
TDADAGQNGWVALSVLNGSDIFVIDTGKGVLRAKVSLDREQQSSYVLWIEAVDGGDPALS
STAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVIAYS
IIGRRGPRPESFRIDPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVNLFV
NDTVSNESYIESLLRKEPDISIEEKQPQISIEPTHKKMESASCMPTLVALSIISLGSIAL
VTGMGIYICLRKGKKHHRADENLEVQIPLNARINLHMLEKKPMEISNI
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
ggacagtatgtgcagctggacaaccgctccggagagctgcacacctcggctgtggagatc
gaccgggaagctctgtgtgtggagagcagtggggccgctgtctttgggggagcaggtgct
gtctcctcctcctcctcctcaccctcgtctgagtcctgcctgctgctgctggatgtgctg
gtgctgccacaggagtacttccgtctggtgaaggtaaaaattgctatccgggatgtcaac
gacaatgcgccccacttccctgtgccccacatccgcctctcagtgcccgagaatgcacct
gtgaacacccgcctggctattgagcaccctgctcttgaccccgatgtaggcaccaacggt
gtccagacctaccgcctgcaagataactatggtgtcttcactctggatgtggaagagaat
gagagcggggagaggactccctacctgattgttatgggggctctggacagggagatgcgg
gaggagtatgtcacagtcatcgttgctgaggatggggggactcctccgcttgtgggtagt
gccaccctcactattggcatcaacgacatcaacgacaactgcccccagttcagcgacttg
cagctcaacgtcactctttatgggaattccagtctagggacacacgtggccactgtccat
gcagtagacatggaccttggatccaatgcccagatcacctactcctacagccagaaggtc
ccccagccatccagagacttgttccatctggacgaaagcacaggaaccatcacgctctcc
agtaaggttgatggggacactccaagggtccacaggctgatcatattgggcaatggtcct
ggttgtatccctgccgtgatcacagtgctagtgaccatcatcaaagtcatgatgaggcca
cctgaagttgtccctcgtttcatagctaatgaagcagaaggggtggtgtacttaaaggaa
ctggagcctgtcaacacaccgatagcattttttaccatcaaagaccctgatgaaaaatac
aaagtcaattgctatttggatggtgatgggcctttcagactttcaccatacaagccatac
aataatgaatacctgttagagaccacaaagcctttggactatgaggcacagcagctgtat
gaaatctcagtagtcgcgtggaactcagaaggatttcgtgtcaacaaaataatcaaagta
cagattctggatgacaacgacaactcgccagttttctctcaacagcttatagaattatcc
attgaggagaacaacgttcccaatgctttcttgaccaaactgcatgctacagatgctgac
agcggagaaagagggcaagtgtcctattttttagggcctgatgctccttcctatttttat
ttagataaaacctcaggagttcttacagtttccacccaactggacagagaagaaaaagag
aaatacagatatactgtcaaagcagtagattctgggttccctccaagagaatcaatagca
actgtcaccatcactgtattggataaaaatgataatagtccaagatttatcaataaggat
ttcagctttttcgtgccagaaaactttccaggttttggtgaaatcggagttataagtgtc
acagatgctgatgcagggcaaaatggatgggttgccctttcagttctgaatggaagtgat
atttttgtcatagatactggaaaaggagttttgagagctaaagtctccctggacagggag
cagcaaagctcctatgttctgtggattgaagcagttgatggcggtgatcctgccctctcc
tctactgcaaaaataactatccttcttctggacataaatgacaacccccctctggtcttg
tttcctcaatctaatatgtcttatttgttggtccttccttctacccttcctggctctccc
atcactgaggtctatgctgtcgataaggacactgggatgaatgcagtcatagcttacagc
atcataggaagaagaggccctcgaccagagtcatttaggattgaccctaaaactggtaat
atcaccttggaagagtcactgatgcaaaatgactatggcctctatcggctgcttgtaaaa
gttagtgatcacggctatccagaacctctccattccactgtcatggtgaacctttttgtc
aatgacacagttagcaatgagagctacattgaaagtttgttaagaaaggagcctgatatc
agtatagaagaaaagcagccgcaaatatccatagagcctacacataaaaaaatggagtca
gcatcctgcatgcctaccttggtagctctgtcaataataagcttgggttcaatcgcttta
gtaacaggaatgggcatttacatctgtctaagaaaaggaaaaaagcatcatagagcagat
gaaaacttggaagtacaaatcccattaaatgcaagaattaacctgcatatgttggagaag
aaaccaatggagatttctaatatttga
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