Gavia stellata (red-throated loon): 104253689
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Entry
104253689 CDS
T08384
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
gste
Gavia stellata (red-throated loon)
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gste03009
]
104253689 (PDCD11)
Ribosome biogenesis [BR:
gste03009
]
Eukaryotic type
90S particles
Other 90S particles
104253689 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
Suf
OB_RRP5
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
ARM_TT21
ARM_TT21_5th
TPR_CcmH_CycH
TPR_12
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
104253689
NCBI-ProteinID:
XP_009805522
LinkDB
All DBs
Position
Unknown
AA seq
1835 aa
AA seq
DB search
MASMEEDFPRGGIQKKPTEGKTPNPKLERDNLFDIHHEEQSQKRKRSQRDQGKQKKFKSD
KTAAAKDNVVNIEPLTIEALCEGMLLLGCIKEVSDYELVISLPNGLSGFVPVTQISDAYS
KMLSQQVAQGELLEDLNSLSDMYSPGTLVRCIVTSVEKRADGRRSIKLSIDPKKVNKGLN
ASALASGMLLSGIVSSVEDHGYLIDIGVSGTHALPPRQKAQNYIKAVKKGPDLKIGQNLN
CVIVEVKNEGRVVRLSVDRSEVAASLATEQQNWTLSNLLPGLVVKARVQKVAPLGIKVSF
LSSFTGIVDFMHVDPEKSMNYSPDQVMKACILSIHPTSKVVRLTLRQAFLHPGGSPNQLS
NDRMGAVVEESTVKAFYKPFGAVFELDDGTLAFARLKHLSKSRKSFKPGTFKTGCKHKCR
IIDYSLMDEMCIVSLKYQIIEARFLQYQDIHTGDVVQGKVFALKPIGMQVKVTDGIKGLV
PSLHIADVMLKQPEKKYNIGDEVRCRVLECNPAGKKLILTLKKSLVQSKLPVLSNYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHEGQVVKVMVLKCV
LXERLLLSFRLSSKPALEDKKECTSKKKQEVKYQIGEMVDVKVLKKKDNGLEVSVLEDEG
NVIASIPTVHLSDFVGNCKLLWHCLQEGDVLPRVMCLSDNGEHIILSRKSAVISAVQEEQ
VVRRFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQT
VIAKVMSIDEEKQRVLLNLKVSECSLGDSAAESFALLNQYFKEIKEIRNLLRRRGEPSMA
QGLCELVPGKELQLVMQDVXGGXXXXXXXXXXXXXPATRYHLGDKNIVPGEKTKALVLHV
DALTSKVYVSLREELLKQRAKQRLTENSQHSAIVQHIAEEFAIVSLLETGQLAAIPIASH
FNDTFRFDSEKLKVGQTISATLKVVKVNDHGVLLAVQGPANKNVFVRVRNESEAALEEML
AAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTYTLKAGQ
KVTARVIGGRDVNTHRYLPITHPHFTRSIPELSIRPSEIEGKVTATLNLKEDGAFKKLGL
YNVGQTVTCFVKKYNILKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFKNGQAISA
TVTRTDVTETNLCLSLTGIQSLEQGTITVGMVTKVTPHIGLTVVLPRGKTGKVSIFHLND
TYMENPLGDFKVGKIVRCYILSNENGKIQLSLRQSRLNPKSKSKVEDVEITCIKDVKKGQ
LVRGYVKSVTPAGVFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLRVN
GKEKHIELSLLPEDTGMPSVLPESLGLPQNDAEKEKRKADDREKREELKLKTKRRRGNSE
SEQEAKPKKRKICPADENDSGIEVYYREEEEDDQEEETAKKKSKIRRPGEAPRLQVSMGF
TWDEDMNAVDIPVLNQKEESSESEEEEDAQSKLKKQTKKEKELEKQKKEKELCKLEAALM
DPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQE
KLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQAEDLYQT
MLKRFRQEKSVWLKYATFLLKQGQTEATHRLLERSLKALPTKEHVDVISRFAQLEFRFGD
PEHAKALFESTLNSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFK
RYLDYEKKFGTTESVLAVKRAALEYVETKSSLADT
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaagactttcctcgagggggcatccagaaaaaacccacagaggga
aaaacacctaacccaaagttagagcgggacaatttgtttgatattcaccatgaagaacag
tcccagaaaagaaaaaggagccaaagggatcaaggaaagcagaaaaagttcaagtcagat
aaaacagctgctgctaaagacaatgttgtgaatattgaaccactcacaattgaggcgctc
tgtgaggggatgctgctccttggttgtataaaagaggtcagcgactatgagctagtcatc
agcttgcccaatggactgtcaggttttgtgccagtcacgcagatcagcgatgcctacagc
aaaatgctgagccagcaggtggcccaaggagaactcctggaggacttgaattcgctctcg
gacatgtattctccagggacactggtcaggtgcattgtgaccagtgttgagaaaagagct
gacggacgtcggagtatcaaattatcgatcgatcccaagaaggtcaataagggtctgaat
gcttcagcactagcatcaggcatgctgctctctggcattgtgtctagcgtggaagaccat
ggctacctcattgatatcggagtcagtgggactcatgcattacctcctcgtcagaaagcc
caaaattacatcaaagcagtcaagaaagggcctgacttgaaaataggccagaatctgaac
tgtgtcattgtggaagtaaagaatgagggaagagtggtccgtttgtctgttgatcgatca
gaggttgctgcatcccttgcaacagaacaacagaattggaccctctctaatttattacca
gggctggtggtgaaagctcgagtgcagaaggtggccccgctcgggatcaaagtgagcttt
ctgtcttccttcactggcattgtggatttcatgcacgtggacccagagaaatccatgaac
tattctccagatcaagtgatgaaagcttgcatcctctctatccaccccacctccaaggtg
gtgcggcttactctgcggcaggccttcctccaccctgggggatccccaaaccagctctcc
aatgatcgcatgggggcagtggtggaagagtcaacagtgaaagctttctacaagcccttc
ggtgctgtctttgagcttgatgatggcactcttgcatttgcaaggttgaaacatctttca
aaatccagaaaatcctttaaacctgggacatttaagacaggatgcaaacataaatgtcgg
atcattgactacagcctgatggatgagatgtgtattgtatctctgaagtatcagattatt
gaagcacggtttctgcaataccaagatatccacacaggggatgtggtgcagggcaaagtg
tttgctctgaaacccattgggatgcaggtgaaagtgactgatgggattaaaggactcgtg
ccgtctctgcatattgctgatgtgatgctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaggtgtcgggtgctagagtgcaatcctgcaggaaagaagctgattcttact
ctaaagaaaagtcttgtccaatcaaagcttccagtactctccaattatgaagatgcaaaa
ccaggtctgatcacacatggctttgtggtgtgtgcgagggagtttggctgcattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagaatgagctgagctcagaacccatatct
tgtccagataaagtcttccatgaaggccaggttgttaaagtaatggtcttaaaatgtgtt
ttannggaaagactcctgttgtccttcaggttatcaagcaagcctgccctggaggacaag
aaggaatgtacttcaaagaagaaacaggaagtgaaatatcaaataggagagatggttgat
gtgaaagtcttgaagaagaaagataacgggttagaggtttctgtcttagaagatgaaggc
aatgtgatagcctcgattcccacagtgcacctctctgattttgttggtaactgcaagctc
ctgtggcattgtcttcaagagggtgatgtcctgcccagagttatgtgcctaagtgacaat
ggagagcatatcatcttgagcagaaagtctgcagtgatttctgctgtacaggaggagcaa
gttgtaagaaggttctctgaaattcagcctgggatgctgttgactggttatgtgaggaat
gtgatgccctttggagtgtttgtggaattcccttttggtgtgacaggactggcacccaaa
gtgagcatgagtgacaagtttgtgacggacaccaaggaccactttgtggtgggacagact
gtgattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctgaag
gtgtcagagtgcagcttaggcgattctgctgcagagagctttgccctgctgaatcagtat
ttcaaggagataaaagaaatcaggaacttgttgagaagaagaggggagcccagcatggcc
caaggcctttgtgagttggtgcctgggaaggagctgcagctggtcatgcaggatgtgnaa
ggaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccagccactcgctac
catttgggagacaaaaatattgttcctggtgagaaaaccaaggcattggtccttcatgtg
gatgccctcacatccaaggtgtatgtttctcttcgggaagaactgttaaaacaaagagcc
aagcaacggctcacagagaattcccagcactctgccatcgtgcagcacatagcagaagag
tttgccatcgtgtctttgttggaaacaggccagctggcagctattcccatagcctctcac
ttcaatgacaccttccgctttgactcagaaaaactgaaggtgggacaaacaatctctgca
accttaaaagtagtgaaggtgaatgaccacggagtcttgttagcagtacaaggcccagca
aataagaatgtttttgtaagggtccggaacgaatctgaggcagcattagaagagatgcta
gctgctgtgaaacactcactttccctgggggatattgttactggtactgttaaatccgtc
aaaccaacccatgtcacagttgctattgatgacaagctgacaggttcaatccacgcgtcc
cggattctggatgaagtgcccataggctcttttccaacatatactctgaaagctggacag
aaggtgactgcccgagtcattggaggcagagatgtgaatactcacaggtacctgcccatc
acccatccacacttcacgcggtccattccagagctcagcattcgaccaagcgaaatagaa
gggaaagtcacagcaacgctgaaccttaaagaagatggtgccttcaagaagcttggactc
tacaatgttggacagacagttacctgttttgtaaaaaagtacaacatcctcaaaaattgg
ctggaggtagaagttgcccctgacattcgaggaagagttcctcatctgctgctgtctctg
aacaccaaggtcttaaaacatccagaaaagagcttcaaaaatggccaggcaatatcagct
acagtgactagaacagatgtcaccgaaacaaacctctgcttgtcactcacaggaattcag
tcactggagcagggcaccatcactgtaggcatggtaacaaaagtaactccacacattggt
ctgactgttgtgctgccacgtgggaagacgggtaaagtcagcatctttcacctgaatgat
acttacatggagaatcctctgggtgacttcaaagttggcaagattgtcaggtgttacatc
ctctccaatgagaatggcaaaatccaattatctctccggcagtcccggctaaacccaaag
agcaagagcaaagtggaggatgttgaaataacatgtattaaggatgttaaaaaaggccag
ctagtgagaggctacgtcaaatcagtcactccagcaggtgtattctttggcttgtccact
tctcttctgggccgaatcctgttccagaatgtttcgccttactttgtacagaaacactcc
ttatatgaaaagtacctgcctgaaggaaagctgctcactgccaaggtgcttcgtgtaaat
ggaaaagaaaaacatattgaactctctctcctgcctgaggacactgggatgccaagcgtc
ttgcctgaatccctaggcctaccacaaaatgatgcagagaaagagaaaagaaaggcagat
gacagggaaaagagagaagagcttaagctgaagacaaaacggagaagaggaaactctgaa
agtgagcaggaggctaagccaaaaaagaggaagatctgcccagcagatgaaaatgacagt
ggaattgaggtgtattaccgggaggaggaggaggacgaccaggaggaagagacagctaaa
aagaaatctaagataagaagacccggtgaagctcccaggctgcaggtttccatgggcttc
acctgggatgaggacatgaatgcagtggatatacctgtgctgaatcagaaggaagagagc
tcagagagcgaggaggaggaggatgcgcagtcaaagctgaagaaacaaacaaagaaggag
aaggagctagagaagcagaagaaggagaaggagctctgcaaattagaggcagccctgatg
gaccccagtcgacagccccagtcagcagatgactttgaccgcctggtgctgagcagtccc
aacagctccatcctctggctacagtacatggctttccacctccaggctaccgagattgag
aaggccagagctgtggcagagagagcgcttaaaacaatctgcttcagggaagaacaggag
aagttgaatgtctgggtagctctgctgaacttggagaacatgtatggtactgaggagaca
ctgatgaaggtctttgagagggctgttcaatacaatgaacctttgaaagtcttccagcat
ctgtgtgacatctatgccaattctgagaagtacaagcaagcagaagatctgtaccagaca
atgctgaagcgtttccgtcaggagaaatccgtgtggctgaaatacgccacttttctcctg
aagcaaggccagactgaggctacacacaggcttttggagcgttctctcaaggctttgccc
accaaagaacatgtggatgtaatttcaaggtttgcacagctggagttccgttttggggac
ccagaacatgccaaggccctctttgagagcaccctcaacagctatcccaaacggacagac
atctggtccatctacatggacatcatgatcaaacatggcagccagaaggaagtacgggac
atctttgagagggtcatacacctgagcttggcaccaaagaagatgaaattcttctttaaa
cgctacctggattatgagaagaaatttggtacaacagaaagtgtcctagctgttaaaaga
gcagcacttgagtatgtggagaccaagagttcccttgctgacacctaa
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integrated database retrieval system
