Gavia stellata (red-throated loon): 104253777
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Entry
104253777 CDS
T08384
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104253777 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gste03400
]
104253777 (MSH6)
DNA repair and recombination proteins [BR:
gste03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104253777 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
104253777
NCBI-ProteinID:
XP_009805636
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEMEQMSESASG
NSDDCNSEEDVKSNKRVASRESAVKVKRRRVLDSDSDHDGSDAEFKPDVKEAASSEEASS
GVDENESTDTETDAESVAESPIKVPSKRKRREITKPAKRSSLENEHSETPKRAVTVSLEA
KSKLTSFAAPESFESQANACSGGSSGFAVWEHEKLDWLQEGKKRDAHRRRQSDPDYDPCT
LYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGT
WAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRYKSMAHPTKFDKVVRREICR
IITKGTQTYSVLDCDPSENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDR
HCSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKVL
LEEGYFKEKQNSENGCSLPSVIRSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLID
QELLSLANFEEYVPVDIDTAKTTSSGSFFAKTDQRMVLDGVTLMNLEVLQNGTNGTTEGT
LLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPD
LERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVMEE
IASDFKSKVLKQLVTRKAKNPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDY
DKALQDIKAVEQDLHEYLDKQRKLLGFKSMLYWGAGKNRYQMEIPESAISRNLPEEYELK
STRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVL
DVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIG
SKDEDSGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCSLTPIDRVFTRL
GASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAE
KIKCRTLFSTHYHSLVEDYAHSAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKS
YGFNAARLANIPEEVIQKGHRKAKEFEKTTISLRIFRYLCLVVDDATGDANAVQKLSTLL
THL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctcatatacaaccatccgacggaaagaacaata
gtcagaggaaaagggaaatccactcgtgtccatgtacagttttttgatgacagccctaca
aggggctgggtcagtattaaatatctgaggccatataaaggttcatcagatggggagacg
ctgaagggaggtatgttttatagtacaaagcctgaaattaaaagagcaatggtgctagcg
gacgatgcaatgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaacct
tcagacacagaggaggaggaagaggaggaaatggagcagatgagcgaaagtgcctcaggc
aacagtgatgactgcaatagcgaggaggatgtgaagagtaataagcgagtagcgagcagg
gaaagtgccgtaaaagtcaaaagaagaagagtgttggattctgacagcgatcatgatggc
tctgatgcagagttcaagcctgatgtgaaagaagcggcaagcagcgaggaagctagtagt
ggggtggatgaaaatgagtccactgacacagagacagatgcagagagtgttgcagaaagt
cccataaaagtcccttctaaacgaaagagaagagagataaccaagcccgctaaaaggagt
agcttagaaaatgaacattccgaaacgcccaaaagagcagtaacggtttctttagaagcc
aagtctaagctgacatcgtttgcagcacctgaaagttttgaatctcaagcaaatgcttgc
agtggaggcagcagtggcttcgcagtatgggaacacgaaaagcttgattggctgcaggaa
gggaaaaagagagacgcgcacaggaggcggcagagtgaccctgattatgacccgtgtact
ctgtatgtaccagaggactatctcaacaagtgtacgccaggaatgcggaggtggtggcag
ctgaaaagtcaaaactttgatgctgtgattttctacaaagttggaaaattctatgagttg
tatcatatggatgcagtcactggcgtaaatgagttgggcctgatctttatgaaaggtact
tgggcccattcaggctttccagaaactgcgtttggcagattctctgatgttctagtgcag
aagggctacaaggtagcccgtgttgagcaaacagaaactcccgaaatgatggaaacgcgc
tacaagtcaatggcccacccaacaaaatttgacaaggttgtacgccgagaaatatgcaga
atcatcaccaaaggaactcagacttacagcgttctggactgtgatccctctgagaaccat
aacaaataccttctgtgcgttaaggaaaaagaagactcctctggacaacgtgtttatggg
gtctgctttgttgacacgtcggtggggaagttttatgtaggccagttctcggatgaccgg
cactgttcgaggtttaggactttagtagcgcattacactcctgtgcaggtgttgtatgag
aaggggaacctgtctgtggacacgcagaagatactgaagggctcacttgtttcttgcatt
caggaagggttgatctctggttcccagttctggaatgcatctaaaacactaaaagtcctt
cttgaagaaggatatttcaaggagaaacagaactctgaaaatggatgttctctgccctct
gtgatcagatctctgacttcagagagtgactcgctgggattaactcctggtgaaaacagt
gaattagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgattgat
caggagctgttatcgctggcaaacttcgaggagtatgtccctgtggatattgatacggca
aaaactacaagttcaggtagtttctttgccaaaactgaccagcggatggtgctggatgga
gtcaccctgatgaacttggaagtcctgcagaacggaaccaatggaaccacagaaggtact
ttgctggaaaggattgattcctgttgtacgccatttgggaagcgactcctgaaacagtgg
ctctgcgctccgctttgtaatcctaaatccatcaacgatcgtttagatgctgttgaggac
cttctggcagtgccagataagatgtctgaagttagtgagcacctgaagaaactgcctgac
cttgaaaggctgctcagcaaaatccacagtattggatcaccacttaaaagtcagaaccat
cctgacagcagggccatcttttacgaagaaatcaaatacagcaaaaaaaagattgctgac
ttcttgtctgcactggaggggtttaaagtaatgaatgaaattgtcgatgtcatggaagaa
attgccagtgacttcaaatctaaagtccttaagcagctagtcacccgcaaagccaaaaat
ccagacggccgcttcccagacttgagtgcagagcttaaaagatgggatactgcttttgat
cataaccaggctcgaaagacaggagtgattactccaaaggcgggttttgaccccgattat
gataaagcactacaggatatcaaagctgttgagcaagatcttcatgagtacctggataag
caacgcaaactgcttggattcaaatccatgctgtattggggggcaggcaaaaaccgatac
caaatggaaataccggaaagtgcaatatcacgtaatttgccggaggaatatgagttgaag
tcaaccaggaagggatataagcgatactggaccaaggagatcgagaagatgctggctgca
atggttaatgctgaagagcgcagagatgcagcactaaaagactgtatgaggcgtttgttt
tacaacttcgataaaaacagcaaagactggcagacggctgtggaatgcattgctgtgtta
gatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacct
gtaattctactgcctgtggatagtgctcctcccttcctggaacttaaaaattcacgccat
ccatgcattacaaaaactttctttggggatgactttattcctaatgacatcgtgataggc
agcaaagatgaagatagcggtagtgaagcttcctgtgtgttagtgactggcccgaatatg
ggtggcaaatctacgctcatgagacaggctggtctcctggttataatggctcaactggga
tgctacgtacctgctgaagtctgcagtctcacaccgattgacagagtatttacgagactt
ggcgcctcagacagaattatgtcaggtgaaagtaccttctttgttgaattgagtgagact
tccagcattctccagcatgcaacagagcattcccttgttcttgtggacgaactgggcaga
ggcacagctacttttgacggaacagctatagcgagcgccgttgtgaaagaactcgcggag
aaaatcaagtgtcggactctgttctccacgcactaccattcgctggtagaggattacgct
cacagcgcggctgtgcggctgggtcacatggcatgtatggttgaaaatgagagtgaagat
ccaagccaggaaacaattacgttcctatataagttcattgaaggagcatgtccaaagagc
tatggcttcaacgcagcaagactggctaatattccagaggaagtcattcagaaggggcac
agaaaagcaaaagagtttgaaaaaacaaccatttcactgagaatatttaggtatctctgt
ctggtggtggatgatgcaacaggtgatgcaaacgctgttcagaaactgagcactctgctc
actcatctttaa
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integrated database retrieval system
