Gavia stellata (red-throated loon): 104254344
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Entry
104254344 CDS
T08384
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(III) chain-like
KO
K19720
collagen type III alpha
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104254344
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gste00536
]
104254344
Glycosaminoglycan binding proteins [BR:
gste00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104254344
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
104254344
NCBI-ProteinID:
XP_009806373
LinkDB
All DBs
Position
Unknown
AA seq
1457 aa
AA seq
DB search
MMSFVQKVTLLIFAVFQPSVILAQQDAQGGCTHLGQVYADRDVWKPEPCQICVCDSGSVL
CDDIICDDQELDCPNPEIPFGECCPVCPQTTPPPTRVIVSRGPKGDPGSPGVPGRNGAPG
PPGQPGSPGAPGPPGVCQSCPSINGGSFSPQYDSYDVKAGSAGIGYPQPITGFPGPPGPS
GPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGDR
GIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGAKGDSGAPGPKGETGLPGANGSPGQPGPR
GPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGSS
GSPGERGEPGPQGHAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGTS
GNPGAKGSPGEPGKNGAKGDPGPKGERGENGTPGAAGPPGEEGKRGANGEPGQNGVPGTP
GERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGMRGLPGIP
GSPGSDGKPGPPGNQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPP
GTPGPAGKNGDVGLPGPPGPTGASGERGEPGPSGPPGLQGLPGGPGPAGENGKPGEPGPK
GDIGGPGFPGPKGENGIPGERGAQGPPGPPGTRGGPGPAGSEGAKGPPGPPGAPGGTGLP
GLQGMPGERGASGSPGPKGDKGEPGGKGXIPGARGERGNVGPIGPPGPAGPPGDKGETGP
AGAPGPMGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGAAGP
QGGPGAPGPPGPQGTKGERGSPGGPGAAGFPGARGLPGPPGNNGSPGPAGNAGPAGKDGP
PGPPGSAGSPGSPGPPGTRGEPGSPGEKGPPGARGERGAPGETGPQGIVGGRGNTGLPGL
RGPSGPPGMAGAKGEDGKPGTNGVPGERGAPGPQGPIGQRGLPGEPGRDGNPGSDGSPGR
DGSPGGKGDRGESGSPGPPGPPGHPGPAGNNGAPGKAGERGFQGPPGPPGSAGPAGARGP
AGPQGPRGDKGETGERGSNGIKGHRGFPGTPGLPGPPGPLGPQGAIGSPGASGARGPPGP
AGPPGKDGTSGYPGPIGPPGPRGNRGESGPAGPPGQPGLPGPSGPPGPCCGGGAASLGAG
EKGPVGYGYEYRDEPKENDINLGDIVSSMKSINNQIENIISPDGSRKNPARNCRDLKFCH
PELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLNANPSTVPRKNWWTSESSGRKHIWFG
ESMNGGFQFSYGDPELPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNVKKA
LKLMSSMESEIKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDI
GGPDQEFGVDIGPVCFL
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtaactttgctcatttttgccgtgtttcaaccctcagtt
attttggcacaacaagacgctcaggggggatgtacccatcttgggcaggtttatgctgac
agggatgtttggaaaccagaaccatgccaaatctgtgtgtgcgactcaggatctgttctc
tgcgatgacatcatctgtgacgatcaggagctggactgtcccaacccagagattcccttt
ggagaatgctgtccagtttgtccacaaacaacaccaccacctacaagagtaatagtcagc
cgaggccccaaaggagaccctggttctcctggggttccaggcagaaatggtgcccctggc
cctccgggacagccgggaagtcctggagctcctggcccccccggggtctgccagtcgtgt
cccagtataaacggaggcagtttttctccacagtatgactcctatgatgtgaaggccggt
tcagctggtatcggttacccacagcctattactggctttccaggaccccctggccccagt
ggcccccctggcccacctggtcatgcaggtccccctggctctgctggataccaaggttcc
cccggagaaccaggacaacctggccctcctggacctccaggtcctgttggaatgataggc
ccagttggtccaccaggaaaagatggagaaccaggaagaccaggcagaaatggagaccgt
ggaatccctggattaccgggtcacaagggacaccctgggatgcctgggatgcctgggatg
aaaggtcaacgaggttttgatggaaaagatggtgccaaaggtgacagcggtgctcccggt
ccaaagggtgaaactggtcttcctggagcaaacggatcaccaggccaaccgggaccaaga
ggtccagctggtgaaagaggaagacctgggaatcctggtggccctggtgctcatggcaaa
gacggatctccaggagcagcaggcccacctggccccccaggtccccctggaactgcagga
tttccaggctctccaggttttaagggtgaagctggtccgcctggtcctgctggttctagt
ggtagtcctggagaaagaggagaacctggtcctcagggtcatgctgggccacctgggcct
cagggccctcctggaagagctggaagccctggcaacaagggtgaaatgggaccttctggt
atacccggcgctcctggtctgccaggaggccgtggtcttcctggtcctccaggtacaagt
ggaaatcctggagcaaaaggcagtccgggagaacctggcaagaatggtgcaaaaggagat
ccaggcccaaaaggcgagcgtggtgaaaatggcactccaggcgctgctggacctcctggt
gaggaaggcaaaagaggtgcaaatggtgaacctggccagaatggcgtgcctggtacacct
ggagaaaggggctccccaggtttccgtggcttacccggtagcaatggacttccaggtgaa
aagggtcctgcaggtgaacgtggtagcccaggtcctcctggccccagtggacccgcagga
gagcgtggccaagatggaggcccaggtcttcccggaatgagaggtttgcctggaattcca
ggaagccctggaagcgatgggaaacctggccctccaggtaatcagggtgaatccggccgc
tctggtccacctggccccccaggcccacgtggtcaaccaggtgtaatgggtttccctggt
cctaagggcaatgagggtgcaccaggtaagaatggagaaagaggccctggtggaccacct
ggaacacctggtcctgctgggaagaatggtgatgttggcctcccgggtcctcctggacct
actggtgcttctggggagagaggagaaccaggaccatcaggtccacccggcctccaggga
ttgcctggtggaccaggaccagctggagagaatggaaagcctggagaaccaggtccaaaa
ggcgatattggaggacccggattcccaggccctaagggtgaaaatggtatcccaggtgaa
cgtggtgcacagggtcctccaggacctcctggaacaagaggtgggccaggtcctgctggc
tcagaaggtgccaagggtcctcctggaccccctggtgcccctggaggcacagggctgcct
ggcttacagggaatgccaggagaaagaggagcatctggaagtcctggaccaaaaggggat
aagggagaacctggtggcaaaggtngtattcctggtgcaagaggagagcgaggtaatgta
ggtcccatcggtcctcctggtcctgccggcccacctggagataagggagagactggtcca
gcaggtgccccaggtccaatgggttcccgtggtggtcctggtgaacgaggagaacaaggt
cttcctggacctgctggcttccctggagctccaggccaaaatggggaacctggtgggaaa
ggagaaagaggcccacctggtctaagaggagaggctggaccccctggagctgcaggtcca
caaggtggtcctggtgcaccaggtccacctggtccccaaggaacaaaaggagaacgtgga
tctcctggaggccctggtgctgctggtttccctggtgctcgtggtctacctggtccccct
ggtaacaatggtagtccaggtcccgctggtaatgcagggcctgcaggcaaggatgggcct
cctggaccccctggtagcgctggttctcctggcagtccaggacctcctggaacaagaggt
gagccaggctcaccaggcgaaaaaggaccaccaggcgcacgaggagaaaggggggcacca
ggagaaacaggtcctcaaggcattgtcggtggccggggtaacacaggtttgccaggtctg
cgtggcccaagcggtccacccggtatggcgggtgcaaagggtgaagatggtaaaccaggc
accaatggtgtcccaggagaacgcggtgctcctggtccacaaggtcctattggacaaaga
ggcttacctggagagcctggaagagatggtaaccctggctcagatggctcacctggacgt
gatggatccccaggaggcaaaggtgaccgtggtgaaagtggctctcctggccctccagga
cctcctggtcatcctggacctgcaggtaacaacggtgcacctggaaaagctggtgaaaga
ggatttcagggtccacctggccctcctggctctgcgggtcctgctggtgctcgaggtcct
gctggtcctcaaggtcctcgtggtgataaaggtgaaactggtgaaagaggcagcaatgga
ataaagggtcatagaggatttcctggtacccccggtctccctggtcctcctggtcccctg
ggtccacaaggtgcaattggaagtccaggagcttcaggtgcaaggggtcccccaggacca
gctgggccacctggaaaagacggtaccagtggctatccaggtccaattggtcctcctggc
cctcgtggtaacagaggtgaaagtggccctgcaggtccaccaggccagcctggtcttcct
ggtccttctggtcctcctggtccatgttgtggcggtggtgcagcttccctgggtgctggt
gaaaaaggtccagtgggctatgggtatgaatatcgagatgagccaaaagaaaatgatatc
aatctgggtgacatcgtatcttcaatgaaatcaattaacaaccagattgaaaacatcatt
agtcctgatgggtcacggaagaatccagctcgtaactgcagagatctgaaattctgccat
cctgagctcaagagtggggagtactggattgatcctaaccaaggctgcaagatggatgct
atcaaagtatactgtaatatggaaactggcgaaacatgcctcaatgctaaccccagcact
gtgccaaggaaaaactggtggaccagcgaaagcagtggaaggaaacacatttggtttgga
gaatctatgaatggaggcttccagttcagctatggagatcctgagcttccagaggatgtc
tcagaagttcaactggccttcctccgcatcctctccagccgtgcctcccagaacatcacc
taccactgcaagaacagcattgcctacatggatcaagccagtggaaatgttaaaaaagct
ctgaaactcatgagctctatggaaagtgagatcaaggctgaaggaaacagcaaattcaca
tatgctgttttggaagatggctgtactaagcacactggtgaatggggtaaaacagtcttt
gaatacagaacgcgcaagacaatgaggttgcctgtggttgatattgcacccatagatatt
ggtggtcctgatcaggaatttggcgtggacattggcccggtctgcttcttataa
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