Gavia stellata (red-throated loon): 104255457 Help Entry 104255457         CDS       T08384                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism gste  Gavia stellata (red-throated loon) Brite KEGG Orthology (KO) [BR:gste00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:gste03021]     104255457 (SETX) Enzymes [BR:gste01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104255457 (SETX)     5.6.2.5  RNA 5'-3' helicase      104255457 (SETX) Transcription machinery [BR:gste03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      104255457 (SETX) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 AAA_30 Viral_helicase1 UvrD-helicase AAA_22 nSTAND3 AAA_16 SLFN-g3_helicase RNA_helicase Motif Other DBs NCBI-GeneID:  104255457 NCBI-ProteinID:  XP_009807831 LinkDB All DBs Position Unknown AA seq 2604 aa AA seqDB search MSTCRWCTPSGSDTTEFLKSYASKRLSPEDLEGSNDDLCYCLECVVEYHKAREKLPKLHE VLWELETSRLVAHIEKSMQEEAGEDDELFIVDENGETQLSGYVGPDFENNLRVPLLEILK YPYLLLHEKVSELCVEVLCRMEQSQSSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSSSMIEKGKLILLPSHLYDTANHKNYWL GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADESTDPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINSVSYNNEIQNIRSSFKRTKSEPESDYNDDMVTCSQIVYN YNTEKPQKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGRDMRVHHSTFLWFIPFVQSL MDLKDLGVAYIVEVIHYLCSEIKDILNERIQQCDKISEFFLLILVSIIELHRNKKCLHLL WISSQEWVEAVVRCAKLPAIAFTRCTEKASGHCARGSSAVSLQASNSVQHACVQLIRSLL KEGYQIGQQALCKQYLDKLNLLLRGSLSLGWQLNIQETQELQVCLKQVIRSIRDRTLNNP LPTGNNGNSTILPTTSIKQEKSARGDGCKMSVQGRDDLCSPFAVTLKEGGDEDCQENPSL RRKSACEEECRDASKSSRSWTSTGLLMNIKKEHNDTTTQEYVFPQNSLATKVRGKVQKNR NNDLAAGKCDTDNQCFNPNTQRSDFRRVGELENKCEGGPITPMCLARIGSPEHVYSSDIK ESNMSPSSSSKFKVDAHRLMNLKNKVQKTEWPSKVSQLAKPCDLKNCSLAASASKAEAEQ CKFCTGYLCTSKDCHKHQGVNTVCENEISVDTPSSRSCESTQEKSVNSAFLSRLVPAKQV SKETPLDCSGSSKSEPGMQENEDDGVLLSGISDTLLKKVSMEEKPNSVLKSVFKKDTDMQ ISDREQPNLNDLVKYDCKDQISKTLCVDKTSANGGVPSSSENKRDVSNPASQIRPLSVKC ELRDRLFRFSEYFKRENKSMGKKEEDFVNTVSEDNTLTDSQVDRELSKLSLAAYAKSVNF PFESSQESSVHHNVCDIKRKVKGAVRSSNDGPSTKSPCDADCLDNQVIIISDSSDDKEET KKKNENVCPEKQPSTSSCISDTKIESETPSSPLPLEDCESQYFEFETDVDVFSVWQDTQA YSMEATQEYKQDHVSASVDSNSHGSLNDHTNEWGYDVDYISDDIMEEEANLIEKQIENIS HQKEADNTKEVTNSTLQESISKGNAKDQLEDFADKGTVAKDFTLDSKSTEPRASTSNISL ASKLALKKNSASPRKNIAKSKVARTLQRSPKKPPVLKTVQNKILLQSTLKNSQPGRSMPA VVPPRKVRQCPVPTLTVEKLGLKKAPRKAFELSQRSLESLAQLRSYGKAAGRVGAAQKQK TKLIAPQSLSIKHNKKLLACQDLQFLRQTRPKKSVRVKNLAGSSESRNKKVSKVDAKSMK QKPKSFELASVEGSVENQREKKREETVCPSASERKFESLSVEEETCVSKMPGSSETNRKS EDDSMMVPPVAMDSSLPSTALVGDDKDEPSGEGCILQPECEKTTSKENGCKSDENSEDDD DLFLTQLDPVDMELCSEEESVQDTAIASKKEEVDTAESLQKNESLTTVKCKYKDCMEKVE NPGEYCRKHSATSSEADHLFAKPSLLPPSKTRKPSTTKIFSSASSSRNAAFSKDLEDVKK LPPASKTKVNPAKLAVVRPPNAKAVPVGNQTCKSPSFSNVPQPHISNNVLQSQNRQNDNA SNISRRPAREAYSSFLGASQRDHSIFVNEVLKWTYEMFANSSQFGPPSNLLQSVVASVPV QFQGYNDYFNTFFPLMMLNAFETLAQEWIENQRVREKSYYFYLQNFCADLNTADFTAHFR ESDLARQLHPKEDDLIFLVVQKKKDTFREESEMENHIVNHVGLVTRFSRATGCLTRQKEQ HTVCHLSVRTRGNLSFFINKQVKCVVVGSLVTTHRTFRGLLLLSRSPLAKPIINPSYDDF CPRHLPIASESAASDMNEYNEDQKRAIETAYAMLKQHPGLPKICLIHGPPGTGKSKTIVG LLSRVLRENTRSLKTTQKANSKIKPNRFLVCAPSNAAVDEVMKKIIVAFKEKCQNRQEPL GNCGDIKLVRLGAEKAINSEVRGFSLDKQVEHRMKRKPADSDQDIQKKKEALDQRLDMLS RQRAMHRCEKRESQLLDDEIGRLSKERQQLASQLKEVRGHSQKVQADIILESDIICCTLS TSGGSLLESALWRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTVK SVKAQEYGYDQSLMARLHRHLEQQVQKNVLRSLPVVQLTVQYRMHPDICLFPSNYVYGRT LKTDKATEENRCSSEWPFQPYLIFDVGDGREERDNDSFSNPQEVKLVMELIRTIKEKRKD LGLRRIGIITPYSAQKKKIQEQLDRVFKNNSPGEVDTVDAFQGREKDCIIVTCVRANSTK GSIGFLASLQRLNVTITRARFSLFILGRLKTLMEQKSFGLYRYALSCALAAASSVGILFL LQWQHKLQIKAYEVCVVPVSPCDE NT seq 7815 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgtcgatggtgtacacctagtggttctgacaccactgagttcctgaagagc tatgcttctaaacggctgtccccggaagatcttgaaggatccaatgatgatctctgttac tgcctggagtgtgtggttgaataccacaaagcaagggaaaaattgccaaagttgcatgag gtcttgtgggagttggaaacctcccgtcttgttgctcacattgagaaatccatgcaagaa gaagctggagaagatgatgagttgtttatagtggatgagaatggagagacacagctgtct ggctatgttggcccggattttgagaataacctgcgagtgccccttctagaaatactgaaa tatccgtatctgctgctgcacgagaaagtcagtgagctctgtgtagaagtgctctgtaga atggaacaaagtcagagctcctttcaggtctttgagaaatatccaggaatttatctcttt ttggtacacccgaatgaagtgattcgtcgatgggccatcctaacagcaaggaatttaggg aaggttgacagggatgattactatgacttgcaggaggtgctgacttgcttgttcaaagtt attgagttggggctttttgagagtccagatatttacagctcttcaatgattgaaaagggt aaactcatccttctgccatctcatttatatgatactgctaaccacaagaactattggctg gggatttgtatgttgctaacagtgctggaagaacaagctatggactccttgttactgggc ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaagaagcagct gatgagtctactgaccccttctggccagcgctgcattgtttcatggttattttggatcag ctcggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc aacagtgtgagctacaacaatgaaatacaaaatatacgcagtagctttaagaggacaaaa tctgaaccagagtcagactacaatgatgacatggttacttgcagtcagattgtgtataat tacaacacagaaaagcctcaaaaggatactggatggaagactgccatttgtccagactac tgccccaacatgtatgaagatatgcaaacactggctaacgtgcttcagtctgatattggc agagatatgcgtgtccatcacagcacgtttctgtggttcatcccttttgttcagtcgctt atggatctcaaggacttgggtgtagcatatatagtagaggtcatccactacctctgctca gaaatcaaagatattctcaatgaaagaatccagcagtgtgacaaaatctctgaatttttt ctcctgatcttggtgtcgattattgaattacacagaaataaaaaatgcctgcatttgcta tggataagctcccaagaatgggtggaagcagtggtgagatgcgctaagcttccagctata gcatttacacggtgcactgaaaaagcatcaggacactgtgcgagaggttcatcagcagta tctttacaagcttctaactctgtgcagcatgcctgtgtgcagttgatacgcagccttctt aaagaaggctatcaaattgggcagcaagctctttgcaagcaatacctagacaaactcaat cttcttctgcgaggaagtctatctttaggttggcagctgaacatccaggaaacccaggaa ttacaagtgtgtttaaagcaagttataagaagtataagggacagaacattgaataaccct ctgcctacaggaaacaatggaaactctacaattttgcctaccacttctataaaacaagag aagagtgcacgtggcgatggatgtaagatgagtgtacaaggcagagatgacctttgttca ccatttgctgtcacattgaaggaaggtggagatgaagattgtcaagagaacccttccctt agaagaaagagtgcctgcgaagaggaatgtagagatgcatctaaaagttcaagatcttgg acatccacaggcctcttgatgaatattaaaaaggaacataatgacacgacaactcaggaa tatgtcttcccacagaactctttggcaacaaaagtacgtgggaaagttcagaaaaatagg aacaatgatcttgcggcagggaaatgtgatacagataatcagtgctttaatccaaatacc cagcgttcagatttcagaagagttggagagttggaaaacaaatgtgaaggaggaccgata acaccaatgtgcctggctcgtattggttctccagaacatgtttacagctcagatataaag gagagcaatatgtctcccagttcctcttcaaagtttaaagtagatgcgcatagactcatg aatttgaaaaacaaggtacagaaaactgaatggccctcaaaagtatcgcagctagcaaag ccatgcgacttgaaaaactgcagtttagcagcaagtgcttcaaaagcagaggcagagcaa tgtaaattttgcactggctatctatgtacaagcaaagattgtcataaacatcagggagtg aatactgtgtgtgaaaatgaaatctctgttgatactccatcttcaaggagttgtgaaagt acacaggagaaaagtgtcaacagtgcttttctatccagactggtccccgctaaacaggta tcaaaagaaacaccgctagattgctctggctcctctaaaagcgaacctggtatgcaggaa aatgaagatgatggtgttttgctttcagggattagtgacaccttactgaaaaaagtatcc atggaagaaaaaccaaattcggtgttgaagtctgtgtttaagaaagacactgacatgcaa atttcagaccgggaacagcctaatttaaatgacttggttaaatatgactgtaaagatcaa atttcaaagacactctgtgtggataaaacttcagcaaatggtggtgttccatctagctct gaaaacaagagggatgtatccaaccctgcttctcagatcaggccactgtcagtgaagtgt gaattacgtgacaggttgttcagattctcagaatatttcaaaagggaaaacaaatcaatg gggaagaaagaggaggattttgtgaatacagtttctgaagataatactttaacagactcc caggttgatagagaactcagtaaattatctttagctgcgtatgccaaaagtgtcaatttc ccctttgagtcaagccaagaaagctcagtacatcataatgtatgtgatattaaaaggaaa gtgaaaggtgctgtaagatcttccaatgatggcccaagtaccaagtctccctgtgatgca gattgccttgacaatcaagtcattataatttcagactcttccgatgacaaggaggagaca aaaaaaaagaatgaaaatgtgtgtcctgaaaagcagccttcaacttccagctgcatttct gataccaaaatagaatcggagacgccaagctctcccttgcccctggaagactgtgagtct cagtacttcgaatttgaaacagatgttgatgtcttttcagtttggcaagatactcaagcg tatagtatggaagcaactcaagagtataaacaagatcatgtttcagcgtcggttgatagt aattcacatggctcgctgaacgatcacacaaacgaatggggttatgatgtggattacata agtgatgatatcatggaggaagaagcaaacttgatagaaaagcagatagaaaatatttct catcagaaagaagctgataatacaaaagaagtaactaattcaacattgcaagaatctatt agtaagggaaatgcaaaagatcaactggaggattttgcagacaaaggtactgttgctaaa gacttcaccctggactcaaaatcgactgaacccagagcatctacatctaacatctcatta gcttcaaagttggcccttaagaaaaatagcgcgagcccacggaagaatatagcaaaatct aaggtagcaaggacgcttcaaagaagtcctaaaaaacctcctgttcttaaaacagtacaa aataaaatactgcttcaaagtacgttaaaaaattctcaacctggcaggtcaatgcctgct gtggttcctccaaggaaagttcggcagtgtcctgtaccaacgttaactgtagaaaaactt ggtctcaagaaggcaccccgcaaagcgtttgaattatcccagcgctctttagagagtcta gctcaattgcgcagctatggtaaagctgcagggagagttggagctgcacagaaacagaag actaaactaattgctcctcagagtttgtctataaaacataataaaaaattgctagcctgc caagaccttcagtttttaaggcagacaaggcccaaaaaaagtgtcagagtgaaaaatctt gcaggaagttctgagagtagaaacaaaaaagttagcaaagtggatgcaaaatctatgaaa caaaagcctaaaagttttgaactggcatctgttgaaggatctgttgaaaaccaaagagag aaaaaaagggaggagactgtttgtccctctgccagtgagagaaaatttgaaagcctctct gtggaggaggagacctgtgtctctaaaatgcctggttcttcagagacaaacagaaaatca gaggatgacagtatgatggttcctcctgtagctatggattcaagtctgccttccactgca cttgttggcgatgataaagatgaaccttcaggagaaggttgcattctccaacctgagtgt gagaagacaacttcaaaagaaaatgggtgtaaatcagatgaaaacagtgaagatgatgat gatctgtttttaactcagttagatcctgtggatatggaattatgttccgaggaggaaagt gttcaagatactgctatagctagtaaaaaagaggaagtggatactgctgaaagccttcag aagaatgaatccttgactactgtgaaatgtaagtacaaagactgtatggaaaaagtggaa aatccgggagagtactgtagaaagcattcagccaccagctcagaagcagatcacttgttt gccaaaccttctctcctgccaccttctaaaacaagaaagccttccactactaaaattttc agctcagcaagttcttcacggaatgcagccttcagcaaggatctcgaagatgttaaaaag ctgccaccagcttcaaaaactaaagtgaatccagcgaaactggcagtggtcaggccaccg aatgcaaaggctgtaccagtaggaaatcaaacatgcaagtctccaagtttcagtaatgta cctcaaccccatatttctaacaatgttctccagtcacaaaatagacaaaatgacaatgct tcaaatatttccagaaggcctgcccgagaagcatattcttcctttctcggtgcttcgcag cgtgatcatagtatttttgttaatgaagtccttaagtggacgtacgaaatgtttgcaaac tccagccagtttggacctccaagtaatctcctgcagtctgtagtagcctctgttcctgtc caattccagggatacaatgactattttaatacattttttcccttgatgatgctaaatgcc tttgaaacactggctcaagagtggatagaaaatcagagagtaagagagaagagttactac ttctacttacagaacttctgtgctgacttaaatacagcagattttacagctcattttcga gaaagtgatttggcaaggcagcttcatccaaaggaggatgacttgatctttttggtggtc caaaagaaaaaagacacctttagggaagaaagtgagatggagaaccatatagtgaatcat gttggtcttgtgacacgattttctcgtgcaactggctgtttaactagacaaaaggagcag cataccgtctgtcatctttctgtgcgaactcgaggcaatttgtcattcttcataaataaa caagtgaagtgtgtggtggttggctcgctggtgaccacacaccgaacgttcagaggtctg ctactattgagcaggagtcccctggctaaacccatcataaatccaagttacgatgacttc tgtcccagacatttgcctatagcttcagaaagtgctgcatcagatatgaacgaatacaat gaagatcaaaagagagccattgagacagcttatgccatgctaaagcagcatccagggctt cccaagatctgcctcatccacggaccacctggaacagggaaatcaaaaactattgttgga cttctgtctcgtgttttgagagaaaacactaggagtttgaaaacaactcaaaaagcaaat tccaagatcaagccaaaccgttttctagtttgtgcaccatcaaatgctgctgttgatgaa gtcatgaaaaagatcatcgttgcgtttaaggaaaaatgccaaaacagacaggagcctttg ggaaattgtggtgatatcaaattagtgcgacttggtgctgaaaaggcaatcaacagtgaa gtccggggatttagcctggataagcaagttgaacatagaatgaaacgaaagccagctgac tctgaccaggatattcagaagaaaaaagaggctctggatcaacggctggacatgctgtct cgtcagcgtgccatgcacagatgtgagaagagggagagtcaattgttagatgatgaaatc ggcagactttcaaaagagagacaacagcttgcttctcaactaaaggaggttcgggggcac tctcagaaagtacaggcggatatcatcttggagtccgacatcatctgctgcacactgagc acaagtggaggaagtctgctggaatccgctctttggcggcaaggacttgatcctttcagc tgtgtcattgtggatgaggcagggcagtcctgtgaggttgaaacactgattccactgatc catcgctgtaataaacttgtccttgttggagatcccagacagctccctcctactgtaaaa tcagtaaaagcccaggaatatggctacgatcagtccttgatggcacgcctgcacagacac ctggagcagcaagtgcagaagaatgttttacgaagcctgccagttgtgcagctgactgtg cagtacaggatgcaccctgacatctgcctcttcccatccaattatgtttatggcaggact ctaaagactgacaaagcaacagaagagaacagatgttcttcagagtggccattccagccc taccttatttttgatgtaggagacggtcgtgaggagcgagacaatgactcttttagtaat cctcaggaagtgaagctggtgatggaattaattagaacaatcaaagaaaaaaggaaggat ctgggtcttcgtcgtattggaataattacgccttacagtgcacagaaaaagaaaattcaa gaacaactggacagagtgtttaagaataacagcccaggagaagtggacacagtggatgcg ttccagggacgagagaaagactgcatcatagtgacatgcgtccgggcaaacagtactaaa gggtcaattgggtttctggcaagtcttcagcgtctgaacgttacaattactcgagccaga ttcagcctcttcatccttggaagactgaaaacgctcatggaacagaagagctttgggtta tacagatatgccttgagttgtgctctcgctgctgcttcatcagttggaatccttttcttg ttgcagtggcaacacaaactgcaaattaaagcctacgaggtctgtgtggtcccagtgagt ccatgtgatgaataa

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