KEGG   Gavia stellata (red-throated loon): 104258810
Entry
104258810         CDS       T08384                                 
Symbol
TRIM42
Name
(RefSeq) LOW QUALITY PROTEIN: tripartite motif-containing protein 42
  KO
K12018  tripartite motif-containing protein 42
Organism
gste  Gavia stellata (red-throated loon)
Brite
KEGG Orthology (KO) [BR:gste00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:gste01009]
    104258810 (TRIM42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gste04121]
    104258810 (TRIM42)
Protein phosphatases and associated proteins [BR:gste01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     104258810 (TRIM42)
Ubiquitin system [BR:gste04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    104258810 (TRIM42)
SSDB
Motif
Pfam: fn3 zf-B_box Pur_ac_phosph_N Ig_DSCAM-DSCAML_C Ig_J_second
Other DBs
NCBI-GeneID: 104258810
NCBI-ProteinID: XP_009812308
LinkDB
Position
Unknown
AA seq 902 aa
MDENGHARSIWPCCSNCCYLTCHSRKEESCLCWRFLFTSEQNCSCFPCPYEEDKPCQCCH
CSCAEHANCWXCCCSCSNDPDCKYCCCGGENSACQYYESKCCRSSVDEPHHSRTPGTVQS
KDVMSRFRTRNNASVITPXRNVSSHAFRDQLACPLCKQLFLQPFMLPCNHCICEKCITKS
KTKAEVTEDFYIIIXPVCSKAHCLPYTNKIHLRKNYLRAKLAKKYMCRHGFLRWRFDHCE
GPVYCETCRERRRVATKRCRTCGINYCNECLHLNHSKDGAQDHIFTKAHQEDHEQWCCLL
HSNSNLSEYCLDDHELNCGFCKNSLHNDHETIPLAVACSREAASLFDTIAKFRKVRQGVD
NDLMEVTLLKNNFKTYKDTKRKELRNGFLKLCTVLHEQEKDMMELLENIELKKQKEISEY
INYASSQLSYMDGLIQYSKEALKXESQVVFLQSAHCLVKEIENAIPSIFQHSPHLREGPL
RKLQLNFDELFSVLQGLVPSASRIKQSESKAEKHPYSFNPETIVPRHVSSTRESKQAALF
RSPSLNSLFDLGVLSKDTVRRLSFSPPHHPTQSNEVCAYWDTACETPRKERKYQIVNFSS
PEPIGNESIPVPGPVVIYQTVVYPKSAKIYWTCPTEDVDFFEVEFYEVVGISPDNIVQTQ
LAGQLSKIQQQNLEIHNLDPNTEYLFKVRAVNASGRGEWSEICKIITSDGYGKIEDRDGL
ARFLYFTSAIPTRCWQQGLPGAGRSRFQPLLQRRHHPRAQLSPSEELVAPLGKRIEERAK
MPERSEEKSVRNTSMNTQVREGGGRGAPGAGAEITPQPTESPHQSRGYSVKELRPGETPC
WSRFIPKEPQAVARPHARAEERHVEEEAAEIRCYGLSTAPCSPSPCAAWGGDEGGRTQRN
LE
NT seq 2709 nt   +upstreamnt  +downstreamnt
atggatgaaaatgggcatgcccgttcaatctggccatgctgctcaaactgctgttacctg
acttgccacagcagaaaggaagaatcctgcttgtgttggcgcttcttgtttaccagtgag
cagaactgcagctgtttcccatgtccgtatgaagaagacaaaccttgccagtgctgccac
tgctcatgtgcagagcatgcaaattgctggtagtgctgctgctcttgttcaaatgaccca
gactgcaaatactgctgctgtggtggagagaattcagcatgtcagtattatgaaagcaag
tgctgcagaagctctgttgatgaaccacatcactcaagaacaccaggaactgttcagtca
aaagatgtcatgtcaagatttagaactaggaataatgcatctgtcattacaccataaagg
aatgtctccagccacgctttccgtgaccaacttgcctgtccactgtgcaagcaattgttt
ctccaaccatttatgctgccatgcaatcactgcatttgtgagaagtgtataactaaaagc
aagaccaaagctgaagtaaccgaagacttttatatcatcatatgaccagtgtgtagcaaa
gcacattgcctcccctacacaaataaaattcatctgaggaagaattacctccgagcaaaa
ctagccaagaaatacatgtgcagacatggctttctgaggtggagatttgaccattgtgaa
ggaccagtctactgtgaaacttgcagggaaagaagaagagtggcaacgaaaagatgtaga
acatgtggaattaattattgtaatgaatgtctgcatttaaatcatagcaaggatggtgct
caagaccacattttcaccaaagcacatcaagaagatcatgaacagtggtgctgcttactg
cacagcaactcaaacctctctgagtattgtctggatgaccatgaactgaactgtgggttc
tgcaagaactccctgcacaatgatcatgagactattcccttggcagtcgcatgttcaaga
gaggctgcttccctctttgatacaattgcaaaatttagaaaagtacgccaaggagttgat
aatgatctaatggaagttaccctgttaaaaaataatttcaagacctataaggacaccaaa
aggaaggagctcagaaatggattcttaaaattatgtacggttcttcatgaacaagaaaag
gacatgatggagttgcttgaaaacattgaacttaaaaaacagaaggaaatttcagaatac
ataaactatgcatccagtcagctatcatatatggatggccttattcaatactctaaagag
gctcttaagtaggaaagccaagttgtgtttctgcaatctgcacactgcttagtgaaagaa
atagaaaatgccattccttccattttccaacatagtccacatctgagagaaggtccctta
agaaaacttcaacttaactttgatgaacttttctccgttttacagggacttgtcccatct
gctagcagaataaagcagtcagaaagtaaagcagaaaaacatccctattcttttaaccca
gagacaattgttccaaggcatgtttcaagtactcgcgaatccaagcaagcagcattgttc
cgaagcccatcgttaaattccttgtttgatttaggtgtgctgtctaaagacactgtcaga
agactaagcttttcacctccccaccatcctacacagagtaatgaagtgtgtgcgtactgg
gatacagcttgtgaaactccaagaaaagaaagaaaataccagattgttaacttttcaagc
ccagaacctataggcaatgaatccatcccagtcccaggacctgttgttatataccagact
gttgtttacccgaagtctgccaaaatttactggacttgtcccacagaagatgtggatttc
tttgaggtagagttttatgaagttgttggtattagtcctgataacattgtccagacacaa
ctagctggccagctaagcaaaatacagcagcagaaccttgagatacataatctggatcca
aatacagaatatctttttaaagtccgtgctgtcaatgcaagtggtcgaggagaatggagt
gagatctgtaagataatcacttcagacggatatgggaaaatcgaagacagggatggtctt
gcacggttcctttatttcacttcagccataccaaccaggtgctggcagcaggggctgccc
ggagccggccgcagccggttccagccgcttctgcagcggcgccaccaccccagggcacag
ctgagcccatcagaggagctggtggcgcctctgggaaaacgtattgaagaaagggcgaaa
atgccagagaggagtgaggaaaaaagtgtgagaaacaccagtatgaacacccaggtgaga
gaaggaggaggaaggggtgctccaggtgccggagcagagattaccccgcagcccacggag
agtccacaccagagcaggggatattccgtgaaggagctgcggcctggggagacaccctgt
tggagcaggtttatcccgaaggaaccgcaggctgtggcaaggccccatgctagagcagag
gaaaggcacgtggaggaagaagcagcagagataaggtgttacggactgagcacagccccc
tgttccccatccccctgtgctgcttggggcggggatgaaggggggagaacacagaggaat
ctggaatga

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