Gavia stellata (red-throated loon): 104259750
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Entry
104259750 CDS
T08384
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
gste
Gavia stellata (red-throated loon)
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gste03021
]
104259750 (SCAF8)
03041 Spliceosome [BR:
gste03041
]
104259750 (SCAF8)
Transcription machinery [BR:
gste03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104259750 (SCAF8)
Spliceosome [BR:
gste03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104259750 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104259750
NCBI-ProteinID:
XP_009813554
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAXPVVTPVLP
STTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQQLI
QTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLMDRF
DFGEESEQNEETKKETPTSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQPQK
ASPEENQEGNFGSEHSASPSQGSSQQQFLEVETNVDDSMDIQQQDMDIDEGQDVAEEEIF
EQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYS
SERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESIN
MIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLG
VSYIPWEKVKLDDLDGFAEGGMIDQETVNTEWETARSSEAAKENIQTTQSAAVDKSTVIT
TQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSAIPPPPFLRASFNPSQP
PPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTSLVLPVGTVTS
NLATPTLSAGSVFNPLPINKPESDEKGSHLTDLQISSSENNRSVQSDVSSSSGLVGGVQP
PSVSSSSGLTGEGQPPSVSSSSGLAGGVQPPSVSSSSGLVGGVQPPTVSSNSGLAGGVQL
PTVSSSSSLAGGVQPTSVSSNSGLMAGVQPPNVSSSSGLLAGVHPPNVSSSPGLXXXXXX
SSGVLAGVQPPSVSSNSGLLIMPPPNVSSSSGLMGVPPPNISSSSGLLAMQHPAAVQNMP
HLNISSQRMPGMPLIDIRPGLIPHSPGPRFPLMAILDPSLHPPPRGPFPPGDIFNQTERP
FGTPGRQSIDSISNPEKRLPLGGDNIQKKEGDRDYRFPPVENRDNLNRPSPVDVRDTVGR
PPVDPREGIGRPPVDGREHFARPHVDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYD
EREHHAFPIYGGPKGFHEDRERFRHVNYRFDSRSGPNWNRGFEQDAHRDFDDRRRPWERQ
RDRDDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENT
ETESQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcatgttgtacag
agtgttgagaaattcattcaaaagtgcaaaccagaatacaaggtacctggtctgtatgtc
attgactccattgtaagacagtcccggcatcagtttgggcaagaaaaggatgtatttgct
ccaagattcagcaataacatcatcagcactttccagaacttataccgttgtcctggggat
gacaagagtaaaattgttagagtgctaaatttatggcagaagaataatgtgttcaagagt
gaaattattcagcctctcttggacatggcagcanctccagttgtgacccctgtcttgccc
agcactacagctgctatgagcaacaatacaccaggaacacctgtgactccagttactcca
gccaatgtggtgcagagtttacctgatccttgggtatctcagattgctaatacagatacc
cttgctgctgttgcacagattttacagagtcctcaaggccaacagcttcagcagttgata
cagacactgcagatacagcagcagaaacctcagccttcactacttcaagccctggatgct
ggtcttgttgttcagttacaggccctcacagcgcaacttacagctgcagctgctgctgct
aacacacttaatccactggaacagagtgtctcttttaataagaagctgatggacagattt
gactttggggaagaatctgaacaaaatgaagagactaaaaaggaaactcccacttcccaa
ctgcctttagtaccagaatctgtgaacaactcactttttcaccaactagctgagcagcta
cagcaacaaaatttagaacatctcagacaacagcttctggagcaacagcagcctcaaaag
gcaagccctgaggagaatcaagaaggaaattttggttcagagcactctgcctcaccatca
caagggagcagtcagcagcagtttttagaagtggaaacaaatgtagatgattcaatggat
attcagcaacaggacatggatatagatgaaggacaggatgttgctgaagaagagattttt
gaacaagaagaaaagaaatcagctgttcgttcaagatcaagaactcgttcaagatctcgt
tcaaggtcaccaagaaaacgaaggtctagatcacggtctggttctcgtaagcgtaaacac
agaaaacgttcacgctcaagatcaagagaaaggaagagaaagtcctctcggtcatattcc
agtgaaagaagggctagggaaagggaaaaagaacgtcagaaaaagggattgcctcctata
cggtcaaaaacactaagtgtttgcagtactactctttgggtgggtcaagtagacaagaag
gctacacagcaagatttaactaacttgtttgaagaatttggacaaatagagtctattaat
atgattcccccaagaggttgtgcttatgtctgtatggttcatagacaagatgcgtatcgt
gctcttcagaaacttagttctggatcctataaaattgggtctaaaattattaagattgcc
tgggctttgaataaaggtgtgaaaacggaatacaagcaattctgggatgtggatctggga
gtttcatatattccttgggagaaagtgaaattggatgatttggatggctttgctgaaggt
ggcatgattgaccaggagacagtaaatacagaatgggaaacagccagaagctcagaagct
gctaaagaaaatattcaaactacacagagtgctgcagttgataagagtacagttattaca
acgcagacagaagcttacacgcaaccagtcactatgctgcagattccggtagctccagct
gtgcctgctgttagcttggttccacctgcatttcctgtcacaatgtctgtccctcctcct
ggttatagcgcaattcctcctccacccttcttgcgagcgagtttcaacccttcacagccg
cctccaggttatatgcctcccccagttccacctgtggtcccaccacctgtggtcccgcca
cctgttgtcccaccagttgttccaacacctttagtacagcctccattaccaattgcacaa
gagacgatgaaagatgttccttttactagccttgttctaccagttggcacagttactagc
aatctagctactccaacgttatctgctggaagcgtttttaatcctctgccaatcaacaaa
ccagaatcagatgaaaagggatcacatcttacagaccttcagatttcttccagtgaaaac
aatagatctgtgcaaagtgatgtctcaagtagctctggacttgttggaggagtgcagcca
cccagcgtctcaagcagttctgggcttactggagaggggcaaccacccagtgtctcaagt
agctctggacttgcagggggagtacagccacccagtgtttcaagtagctctggacttgta
ggaggagtgcaaccaccaactgtttcaagcaattctggtcttgcaggaggagtgcagcta
cctactgtctccagtagctcttctcttgctggcggagttcagccaaccagcgtctcaagt
aactctggacttatggctggagtacaaccgccaaatgtctcaagtagctcagggctccta
gctggagtgcatccacccaatgtctcaagcagccctggccttnncnnnnnnnnnnnnnnn
agctcaggagttctggcaggagtacagccgccaagtgtctcgagcaactctgggcttctc
ataatgccaccacccaatgtttcaagtagttctggacttatgggagtgccaccacccaat
atttcaagtagttctggacttctggcaatgcagcacccagctgcggttcaaaacatgcct
catttaaatattagtagtcaaaggatgccgggaatgcctcttatagatatccgtccaggc
ctaattccccattcgcctggaccaaggtttccattaatggcaatccttgatccatctctt
cacccaccacctcgaggtccttttcctccaggagatatttttaatcaaacagaaagacct
tttggaacaccaggaagacaaagtatcgatagcatttctaatccagagaaaagactacca
cttggtggcgataacattcaaaaaaaggaaggagacagagattatcgctttcctccagtg
gaaaaccgagataatcttaacagaccatctccagtggatgtcagagatactgttggacga
ccaccagttgatccaagagagggtataggaaggcctccagtagatggaagagaacacttt
gcaagaccacatgtagacatgagagaaaattttggaagaccaggtatagataaccttggc
cgaagagagcattttggtttcaattcagacaagcactggggacagagaggagattatgat
gaaagagagcaccatgccttccctatttatggtggccctaaaggcttccatgaagacaga
gagaggtttcggcatgtaaactataggtttgatagtagaagtggtcccaattggaacaga
ggatttgaacaagatgctcacagagattttgatgaccgcagaagaccgtgggaaagacag
agggatagggatgacagagattttaatttttgcagagaaattaatgggaacaggtttgga
agagacagaatgtcaaacaactggatcccccctccacatccacgggtttttgaatatttt
gatggggccacttcccaacgcaaagccgataatatgccccaggtaaacggtgaaaataca
gagacagaaagtcagccaccaactgcacaggtgcaggatgatccagaactttatgaaaaa
ctgacatcttccgtcgagataaacaaagagaagagtgacacagaagctgatatagaaagt
gaaccagtggtagaaagcacagaaactgaggggacataa
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