Gavia stellata (red-throated loon): 104259933
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Entry
104259933 CDS
T08384
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104259933 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gste03032
]
104259933 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
gste03400
]
104259933 (TOPBP1)
DNA replication proteins [BR:
gste03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
104259933 (TOPBP1)
DNA repair and recombination proteins [BR:
gste03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104259933 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
PTPRCAP
Motif
Other DBs
NCBI-GeneID:
104259933
NCBI-ProteinID:
XP_009813790
LinkDB
All DBs
Position
Unknown
AA seq
1520 aa
AA seq
DB search
MKGSKEPFFVKFIKSSGNSEYFFKALESIKEFQSEEHLQILEEETALNIKENDKSLYICD
PFRGVVFNHLKKLGCRIVGPQVVLTCMQSQRCVPRAEYPVYNMTMADVIVSCTSLEKDVR
EEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
SIVRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQDPKGQKYECAKKWNVHCVSVQWFSDSIEKGFCQDETIYKIESGSKLSNAPSTSTPTNH
ASKPDNHPLSDVSHISNINLSGVNETACSSAMSSRLDPLPDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENNDELKHFLDKTAHRPHV
VTAKWLLESFSKGCLHPVEQYIPLNYQLLENPILEQPGMKSVLPKNNSLLKREAVNVTKH
QKAAEDDFLSLYVNNDSTLVEKLTSSTFNDVTHLTVQGENQSSVCNGSLGDSSALVEGGL
FVGKRFLLLGFGDEDESCVADIIKENAGKILPLQSRIIADYAVVPLLGCTVKPTVGDVVT
NTWLITCVEQQLLLDPQSNPLFIPVPVMEGVTPLEDCVLSFSQFTGAERDSLVYLAGLLG
ARVQEFFVRKANAKKGMFASTHLVVREPCGSKYEAAKKWNLPAVTVAWLLQSARTGKRAD
ESKFLVENAEAEDKESSITQLSKTPATVKSPDSEPPTYLLEAGKKTAVTPLDINRFQSKA
FQAVISHHTGKKTTPLAQGGLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETPE
GPNQKTRKLSTPLSEVIGRNLKLALANSTRHRHTVALTASPQLTTAQPEAEEEPKPLADV
VICVSKKLSKKQSELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHI
VSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVQDVRLSFSSKLPSTGKPAEEKEII
PVDEDDAEDDVTTEQIKETVTTGEEQIITSEAKGVLTQALEMRENFQRQLQEIMSATSLV
KPQGQRGSLSRNSFDGSPATPDSTRSVRNGRSRVLEALRQSRQALTDINTEPSQSEQIIW
DDPTAREERARLVSNFQWPNSPSQYTEQGQSNINKNMDESAFKGSLADAEIAGIAVPEAG
DGDLIEGLKSPVCRDPETPIKDHLIPTPQAPSIAFPLANPPVAPQPKEKAVTEDEKADEE
PEKHRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLASMA
AGKWVLHRSYLEACRGAGCFVQEEDYEWGSHSILNVLPGINVNQKKLALAAMRWRKKIHK
GRQETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSVSLFKEATHLFADFS
KLKPDDTRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYLQNNTGLGTG
VSQKRKALGEMSRVKRSRIH
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagtaaggagccattttttgtgaaattcataaagtcttctgggaactcagag
tatttttttaaagctcttgagtctataaaagaatttcagtcagaagaacatcttcagatc
cttgaagaagaaacagcactcaatataaaagaaaatgataaatcgctttacatttgtgat
ccttttagaggcgttgttttcaatcatctcaaaaagcttggttgtagaattgttggacca
caggtagtcctgacctgtatgcagtcccagcgatgtgtcccaagagctgagtatcctgtg
tacaatatgaccatggccgatgtaatagtatcctgtaccagccttgaaaaagatgttagg
gaagaagtccataagtatgtgcagatgatgggtggacgtgtgtacagagacctcaatgtg
tcagtaactcaccttatagctggagaagttggcagcaagaaatacttagtagctgcttct
ctgaaaaagcctattttgcttccctcttgggttaagacactgtgggataagtctcagcaa
agcatagtgagatacactgatgttaacatggaagactacgcttgtcctgtgttccttggc
tgtacaatttgcgtgactggcttaagtagttcagacaggaaagaagtccagcgcctcact
gctgaacatggtgggcaatacacggggcagctgaagatgaatgaatgtactcacctcata
gttcaagacccaaaaggtcagaagtatgaatgtgccaaaaaatggaacgtgcactgtgtg
tctgtgcagtggttttctgacagcattgagaaaggcttctgtcaggatgagacaatatat
aaaatagagtctggatcaaaactgagtaatgcacccagtacatcaacacctacgaatcat
gccagcaagcctgataatcatcccctttcggacgtcagccacatttccaatatcaatttg
agtggtgttaatgaaaccgcatgtagttctgctatgagcagcagactggatcctcttcct
gatgagctggaaaacttggatataagttcttttcaagcccctgaagatttattagatggg
tgtcgaatctatctgtgtggcttcagtggcaggaagttggacaagatgagaaggcttatt
aattgtggcggtggtgttcgatttaatcaacttaatgaagatgttacccatgtcattttg
ggggaaaataatgatgagctgaaacactttttggacaagacagctcacaggcctcatgta
gtgacagcaaaatggttgctggagtcgtttagtaaaggttgtctacatccagtggagcaa
tatatccctctaaactaccagctgttagagaacccaattttggagcaacctggaatgaag
tcagttcttcccaaaaataacagtctcttgaagagagaagctgtgaatgttacaaagcac
cagaaagctgctgaagatgacttcctctctctctatgtaaataatgattctacattagtt
gaaaaactaacatccagtaccttcaatgatgttactcacttgactgtccaaggagagaat
cagtcttctgtctgtaatggttctttgggagactcttctgcattggttgaaggaggctta
tttgtcggaaagagatttcttctattgggttttggtgacgaggatgagtcctgtgttgca
gatattataaaggagaatgctgggaaaattctgccgctgcaaagccgaattattgcagac
tatgctgtggtacctttattggggtgcacggtgaagccgactgttggtgatgttgtcaca
aatacatggctgataacgtgtgtggaacagcagctccttttagatccccagtccaatcca
cttttcataccagtcccagtaatggaaggagttacccctctggaagattgtgttctttct
tttagccagttcactggtgcagagagagactccctggtttatctggcaggactgctagga
gcaagagtccaagaattctttgtgcgaaaagcaaatgcaaaaaagggaatgtttgccagt
acccatcttgtggtgagagaaccgtgtggttccaagtatgaagctgcgaagaagtggaat
ttgccggcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagagagcagat
gaaagcaagttcttggttgaaaatgcagaggctgaagataaggagagttccattactcag
cttagcaagacaccagcaactgttaaatctcctgattcagaaccacctacttacctcctc
gaagctggaaaaaaaacggctgtgacccctcttgatatcaacaggttccagagtaaagct
ttccaagctgtaatctctcatcatactgggaagaagacaacccctcttgcacaagggggg
ctgccacagaaagaaccgtctttacatcttgatacaccgtcaaaatttctttccaaagac
aagttgttcaagccttcttttgatgtaaaggatgctctggcagctttggaaactcctgaa
ggtcctaatcaaaaaaccaggaaactgagcacacctctctctgaagtcatcggcagaaac
ttgaaattggcactggcaaacagcacaaggcataggcatacagtagctcttaccgccagc
cctcagttgaccactgcacagccagaagcggaagaagagcccaagcctctagctgatgtt
gttatatgcgttagtaaaaaacttagtaagaagcaaagtgaactgaacgcagtagcagct
tctcttggggcagactacagatggtgctttgatgaaacagtaacacacttcatctacaag
ggaggacaaaatgacaacaataaggagtacaaatccgttaaagaacggggtatacatatt
gtttcagaacactggcttttagagagtgcccaagaatataaacggcttcctgaatctctc
tttcctcacacttacaatcccaaaatgagcctggacatcagtgcagtgcaagatgtcagg
ctctccttctccagtaaacttccatcaactggaaaaccagcagaggaaaaggagattatt
ccagtagacgaagatgatgctgaagatgatgtaactactgagcaaataaaggaaacggtc
actacaggggaagaacaaattataacaagtgaagccaaaggagttttaacccaagcgcta
gaaatgagggagaacttccaacggcagctgcaggagatcatgtctgccacatcgctcgtg
aaaccacaagggcaaagagggtccctttcaaggaacagttttgatggttctccagccact
cctgatagcacacggtctgtgcgaaatggccgcagtagggtcttggaagctctaaggcaa
tcccgtcaggcactcacagatataaacacagagccatcccagagtgagcagatcatctgg
gatgaccctactgcgagggaggagagagcaagacttgtcagcaactttcagtggcctaat
agtccttcgcagtacactgagcaaggtcagagtaacatcaataagaacatggatgagtct
gccttcaaaggatctttagctgatgcagagattgctggtatagctgttcctgaggctggg
gatggagatttgattgaaggtctaaaaagtcctgtctgtagagatcctgaaacaccaatt
aaagatcacttgatccccactccacaggcccccagcattgctttcccactggctaaccct
cctgtggcaccacagcccaaagaaaaggctgttacagaagatgagaaggctgatgaagaa
ccagaaaaacaccgtaaatttcagctgtcttctcttaatcctcaagaaagatttgattac
tgccatctgattgaggaattaggtggcatagtacttgagaaacagtgctttgatccaagc
tgcacacacattgttgtgggacatcctcttcgaaatgaaaaattcttggcttcgatggca
gctggaaagtgggtgcttcatcgttcctacctggaggcgtgtagaggagctggctgcttt
gttcaggaagaagattacgagtggggaagtcattccatactgaatgtcttgcctggaatc
aatgtaaaccagaagaaactagcactcgcagccatgaggtggaggaaaaaaattcataaa
gggaggcaagaaactggtattgttgagggagctttcagtggctggaaagtgatcctcaat
gttgatcaaaccaaggaagcggggttcaggcgccttcttcagtcaggaggagcaaaagtg
ttttctggtcattctgtgtctctctttaaagaagcaactcatctctttgctgacttcagt
aagctgaagccggacgacaccagggttaatgtagcagaggcggcagcccagggagtgaac
tgcctgaaaccagagtacattgctgattacctcatccaggatccacctccccccatggag
tcttactgcctgccggaagctgaatcttaccttcagaataacacaggacttggaactgga
gtatcccagaagagaaaagcactgggagaaatgagcagagtcaagcgatccagaatacac
tga
DBGET
integrated database retrieval system
