Gavia stellata (red-throated loon): 104260823
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Entry
104260823 CDS
T08384
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104260823 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gste03021
]
104260823 (CPSF3)
03019 Messenger RNA biogenesis [BR:
gste03019
]
104260823 (CPSF3)
Transcription machinery [BR:
gste03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104260823 (CPSF3)
Messenger RNA biogenesis [BR:
gste03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104260823 (CPSF3)
U7-dependent histone pre-mRNA processing factors
104260823 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
104260823
NCBI-ProteinID:
XP_009814952
LinkDB
All DBs
Position
Unknown
AA seq
675 aa
AA seq
DB search
MTLIPFCRGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI
SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLE
ESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM
AAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQEL
LLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHIS
NLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMS
EPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKA
ALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRN
FNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLYYQLQKLTGDVEEIEIQQKPALK
VFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKIQKAAVHKISKKVDMDV
YRKRMEIMLQDMFGEDCVSSKDGSVLCITVDGKTANISLDSRTVDCEPGSEDDESLREMV
ELAAQRLYDALSPVY
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactttgatacccttttgcagaggtgctggccaagaagtaggaaggtcgtgcattatt
ctggagtttaaaggaagaaaaataatgcttgattgtggaatccatcctggactggaagga
atggatgctcttccttatattgatttgatagatcctgctgagattgatctcctcctaatt
agtcatttccatttagatcactgtggggctttaccatggtttttgcagaaaacaagtttt
aaaggaaggacgtttatgactcatgccacaaaagctatttacagatggcttctttcagac
tatgtcaaagtcagtaatatatcagcggatgacatgctatatacagaaacagaccttgaa
gaaagcatggacaagattgagaccatcaacttccatgaagtgaaggaggtggcaggaatc
aaattctggtgttaccacgcaggccacgttctgggagcagccatgtttatgattgaaata
gctggtgtgaagcttttatatacaggtgatttctcaagacaggaagacaggcatctgatg
gcagctgaaattcccaatattaaacccgatattcttatcattgaatctacatatggtact
catatccatgaaaaaagggaagagcgagaggcgagattctgtaataccgttcacgacatt
gtaaatagaggaggtagaggtcttattcctgtgtttgccctgggtcgagctcaagaacta
cttttaattttagatgaatactggcagaatcatcctgaactccatgatatccctatatac
tatgcctcctctttggcaaagaaatgcatggcagtttaccagacgtatgttaacgccatg
aatgacaaaatccgcaagcaaattaacatcaacaatccatttgttttcaagcatattagt
aatctgaagagtatggaccattttgatgatattggcccaagtgttgtgatggcttcccca
ggtatgatgcagagtggcttatccagagagttgtttgagagctggtgcacagataagaga
aatggagtaattatagcagggtactgcgttgaaggaacgcttgctaagcacatcatgtct
gaacctgaagagataacaactatgtcagggcaaaaactcccactgaagatgtctgtggat
tacatttctttctctgctcacacagattatcaacaaactagtgaatttatccgggccctg
aaacctccacatgtgattttagttcatggtgagcagaatgaaatggccagattgaaagca
gcattgatacgggaatatgaggataatgatgaagttcatatagaagttcataatcctagg
aatactgaagctgtgacattaaacttcagaggagaaaagcttgccaaggtgatgggatct
ttagcagataagaaaccagagcaaggacagagaatttctggaatcctagttaaaagaaat
tttaactatcacatcctttctccatgtgacctctctaattatacagacttggcgatgagc
actgtaacacagacacaagccattccatataccggcccttttaatctgctttattatcag
ctacaaaaactgaccggtgatgtagaagaaatagaaatccaacaaaagccagccctgaag
gttttcaaaaatattactgtgatccaggaaccagggatggtagtccttgagtgggtggca
aatcctgctaatgatatgtatgcagacaccgtgacaacagtgatactggaagttcagtca
aatcccaaaatacagaaagctgcagtacataaaatttccaaaaaagtagatatggatgta
tataggaagagaatggagatcatgcttcaggatatgtttggagaagactgtgtgagttca
aaagatggctctgtcctgtgcatcacggttgacggaaagactgcaaacatttcactggac
agtcggacagttgactgtgagccaggaagcgaagatgacgaatcccttcgtgaaatggta
gaactggctgcacagaggctttatgatgccctcagcccagtatactga
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