Gavia stellata (red-throated loon): 104261819
Help
Entry
104261819 CDS
T08384
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gste
Gavia stellata (red-throated loon)
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gste03016
]
104261819 (RTCB)
Enzymes [BR:
gste01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104261819 (RTCB)
Transfer RNA biogenesis [BR:
gste03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104261819 (RTCB)
Prokaryotic type
tRNA splicing ligases
104261819 (RTCB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104261819
NCBI-ProteinID:
XP_009816298
LinkDB
All DBs
Position
Unknown
AA seq
448 aa
AA seq
DB search
AGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGF
DINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIY
NEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARI
ASAEGQDYLKGMAAAGNYAWVNRSKTMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAK
VEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQ
GMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKN
VTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1349 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtggctttttgcctgctatgaaacagattgggaatgtggctgcattacccggca
ttgttcatagatcaataggccttccagatgtccattctggctatgggtttgccattggca
acatggctgcctttgatatgaatgatcctgaagcagtggtttcaccaggtggcgtcggat
ttgacatcaactgtggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagc
ctgtgaaggagcagcttgcccaggctatgtttgaccacattcctgttggtgttggctcca
aaggtgtcattcccatgaatgctaaggatttggaagaggcactagagatgggtgtggact
ggtctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaa
gaatgctgcaggctgaccccaacaaggtctcctcaagagcaaagaagaggggcctgcctc
agctggggaccctgggagccggaaatcattatgccgagatccaggttgtggatgacatat
acaacgaatatgctgccaggaagatgggcatcgaccataaagggcaggtgtgcgttatga
tccacagtggcagcagaggcctgggccaccaagttgccacagatgcattggtggctatgg
aaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccagga
ttgcctctgcagaaggacaggattacttgaagggaatggcagctgctggaaactatgcat
gggtcaaccgctcaaaaactatgacttttctaacaagacaggcctttgccaaagtcttca
acacaaccccagatgaccttgatatgcatgttatctatgatgtgtctcataacattgcca
aagtggagcaacatgtagtggatggaaaggagcggactctgctggtgcacagaaagggat
caaccagggccttccctcctcaccatcctcttatcgctgtcgattatcaactgactggac
agcctgttttaatcggcgggactatgggcacctgtagctatgttcttactggcacagagc
aaggcatgactgagaccttcggaactacttgccatggagctggtcgtgcactgtctcgag
ccaaatctcgacgtaacttggacttccaggatgtattggacaagctggctgacatgggca
ttgccatccgtgttgcttctcccaaactggtcatggaagaagcaccagagtcttacaaga
acgtgacagatgtggttaacacctgccatgcagctggcatcagcaagaaagccattaaac
tgagacctattgctgttattaaaggctag
DBGET
integrated database retrieval system
