KEGG   Gavia stellata (red-throated loon): 104262240
Entry
104262240         CDS       T08384                                 
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
gste  Gavia stellata (red-throated loon)
Pathway
gste03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:gste00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104262240 (CSTF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gste03019]
    104262240 (CSTF1)
Messenger RNA biogenesis [BR:gste03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     104262240 (CSTF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_Gbeta CSTF1_dimer Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 PROPPIN VPS8_N Beta-prop_WDR11_1st Ge1_WD40 Beta-prop_WDR75_2nd Beta-prop_HPS5 Frtz Beta-prop_SPT8
Other DBs
NCBI-GeneID: 104262240
NCBI-ProteinID: XP_009816840
UniProt: A0A093FXT7
LinkDB
Position
Unknown
AA seq 431 aa
MYRTKVSLKDRQQLYKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMEN
DDSAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPT
LRLYDINTFQCFVSCNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYR
ARFWYRRSTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtatagaacaaaagtcagtttgaaagaccgtcagcaactttataaactgataattagt
cagctgctatatgatggatacataaatattgccaatggcttgataaatgagataaaacca
caatcagtctgtgcaccatctgaacaactgctgcacctaattaagctaggaatggagaac
gatgacagtgctgttcaatatgcaattggacggtcagatacagtagctccaggcacagga
attgacttggaatttgatgcagatgtacagaccatgtctcctgaggcttctgaatacgag
acttgttatgtcacatctcataaaggaccgtgtcgtgtagctacgtatagcagagatgga
cagttaatagctacaggatctgctgatgcctcaataaaaattcttgatacagagagaatg
ttggccaaaagtgctatgcctattgaggtcatgatgaatgagacagcacagcaaaacatg
gaaaatcatcccgttattcggactctgtatgatcatgtggatgaagttacgtgtttagct
tttcatccaacagaacagatcctagcatctggttcaagggactacacacttaaattgttt
gattattcaaaaccttctgccaaaagagccttcaaatatatacaggaagcagagatgttg
cgctcaatttcttttcacccttctggagatttcatacttgttggtacccagcaccctact
ttacgactttatgatatcaatactttccagtgttttgtgtcttgcaatcctcaagatcag
cacactgatgcgatatgttcagtaaattacaacgcaagtgcaaacatgtatgtgacagga
agtaaggatggatgcatcaaactgtgggatggtgtctcaaatcgctgtatcactactttt
gagaaggcccatgatggagctgaagtctgttctgctattttttccaaaaattcaaagtat
atcttgtcaagtggaaaagactctgtagctaaactatgggagatatccactggtcgaact
ctggtcaaatacacaggagctggtttgagtggacgacaagtacacaggacacaagctgtc
ttcaaccacacagaagattatgtgctgcttccagatgaaaggaccataagtctctgctgc
tgggattcaagaactgctgaacggagaaatcttctttctcttgggcacaacagcattgtc
cgttgtattgtccattctcctaccaatcctggcttcatgacctgcagtgatgactacaga
gcgagattttggtacagaaggtcaacgacagactaa

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