Gavia stellata (red-throated loon): 104262341
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Entry
104262341 CDS
T08384
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03030
DNA replication
gste03420
Nucleotide excision repair
gste03430
Mismatch repair
gste03440
Homologous recombination
gste03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104262341 (RPA1)
03420 Nucleotide excision repair
104262341 (RPA1)
03430 Mismatch repair
104262341 (RPA1)
03440 Homologous recombination
104262341 (RPA1)
03460 Fanconi anemia pathway
104262341 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gste03000
]
104262341 (RPA1)
03032 DNA replication proteins [BR:
gste03032
]
104262341 (RPA1)
03400 DNA repair and recombination proteins [BR:
gste03400
]
104262341 (RPA1)
Transcription factors [BR:
gste03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104262341 (RPA1)
DNA replication proteins [BR:
gste03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104262341 (RPA1)
DNA repair and recombination proteins [BR:
gste03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104262341 (RPA1)
MMR (mismatch excision repair)
104262341 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
104262341 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
104262341
NCBI-ProteinID:
XP_009816989
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MQGEYVSKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQLNSLVEDESLSAQ
CVCQVNRFIVNSLKDGRRVVILMDLDVLKTADKVGGNIGNPVPYNEGEWQGQQRPSAPAA
NPAPSKPQQQNGNLSVAGPAAPKYHAPSNQFGKASAPSSAKTPGGSQAKVVPIASLNPYQ
SKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADKFFPLIELNKV
YYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFEFVSISDLENTPKD
SIVDVIGICKSYEDVTKITVKANNREVSKRNVHLIDTSGKLVTATLWGNEAEQFDGSRQP
VIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLECASISDVRGGP
ASGASTNWKTLFEAKSENLGQGDKADYFSCVGTVVHLRKENCMYQACPSQDCNKKVIDQQ
NGLYRCEKCDREFPNFKYRMMLLVTIADCLEYQWVTCFQESAEFILGQNAAFLGELKEKN
EQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDVKPVNYREYSKRLIASIRRNA
QLG
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcagggggagtacgtctccaagcccgtgctacaagtcatcaatacacgggctattgct
acaggaaatgggccaccgcgttaccgagtgttgatgagtgatggggttaacacactctcc
tcattcatgttggcgacacagctgaactctctggtggaagatgaaagcttatcagcccag
tgcgtttgccaggttaacagattcattgtcaacagcctgaaagatggaaggagagtggtt
atactgatggatttagatgttctgaaaactgctgataaagttggtgggaatattggcaat
ccagtgccgtacaacgaaggtgagtggcaagggcagcaacgtccttcagctccagcagca
aacccagcacccagcaaaccacagcaacaaaatggcaatttgtcagtagcaggtcctgct
gctccaaagtaccatgctccctcaaaccagtttggtaaagcgagtgctcccagctcagcg
aagacaccaggaggatcgcaggccaaagtagtgccgattgccagcttgaacccataccaa
tctaagtggaccatttgtgctcgtgttacccaaaaaggccagatccgcacgtggagcaac
tcccgtggtgaaggaaagctcttctctatagagctagttgatgaaagcggtgagattaga
gctactgcattcaatgatcaagcagacaagttctttccactcattgaattgaacaaggta
tattattttaccaaaggcaatttgaagactgctaacaagcaatatacagctgttaagaat
gactatgagattacattcactaatgagacttcagttgtgccctgtgatgatgcccagcat
cttccatctgttcagtttgagtttgtatccatctctgacttggagaacacacccaaagac
tcaattgttgatgtaattggaatttgtaagagctatgaagatgtcactaaaattacagtg
aaagctaacaatagggaggtatcgaagaggaacgtgcatctgatagatacatcagggaaa
ctggtgacagctacgctgtggggaaatgaggctgaacagtttgacggttctagacaacct
gtgatagccatcaaaggagcccgagtctctgattttggtggtagaagcctgtctgtcctg
tcctcaagtacagttgtcatcaaccctgatagcccagaggcttttaagctccgaggatgg
tttgactctgaggggcagcttctggaatgtgcctcaatctctgatgtgagaggtgggcca
gcttctggggcgagtaccaattggaaaactttgtttgaagccaaatctgagaacttggga
caaggagataaggcggattattttagctgtgtgggcacagtcgtacatctgcgcaaagag
aactgtatgtaccaggcatgtccctctcaggattgcaataagaaagtcatagaccaacaa
aatggactgtatcgttgtgaaaagtgcgatcgtgaattccccaacttcaagtaccgcatg
atgcttctggtgaccattgcagactgtctagagtatcagtgggtgacttgtttccaagaa
tcagcagaattcattcttgggcaaaatgcagctttcctgggagaactgaaggaaaagaac
gagcaggcatttgaagaagtgttccaaaatgcaaacttcaatacgtatgagttcaggatc
cgagtaaaactggagacttacaatgatgaatctcgtattaaggctacagcagtggatgtc
aaacctgtgaactacagagaatacagcaagaggttgattgcaagcatcaggagaaatgct
cagctagggtga
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integrated database retrieval system
