Gavia stellata (red-throated loon): 104262518
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Entry
104262518 CDS
T08384
Symbol
ITGB5
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-5
KO
K06588
integrin beta 5
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste04145
Phagosome
gste04148
Efferocytosis
gste04510
Focal adhesion
gste04512
ECM-receptor interaction
gste04810
Regulation of actin cytoskeleton
gste04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104262518 (ITGB5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
104262518 (ITGB5)
04148 Efferocytosis
104262518 (ITGB5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
104262518 (ITGB5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104262518 (ITGB5)
04810 Regulation of actin cytoskeleton
104262518 (ITGB5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gste04131
]
104262518 (ITGB5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gste04515
]
104262518 (ITGB5)
Membrane trafficking [BR:
gste04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
104262518 (ITGB5)
Cell adhesion molecules [BR:
gste04515
]
Integrins
Integrin beta subunits
104262518 (ITGB5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
EGF_2
I-EGF_1
EGF_Teneurin
EGF_TEN
vWA_SIBA-E
WD40_Apc4_C_fungal
Motif
Other DBs
NCBI-GeneID:
104262518
NCBI-ProteinID:
XP_009817203
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MDLSLSMNDDLDNIRNLGTKLAEEMRKLTSNFRLGFGSFVDKNISPFSYTAPRYQNNPCI
GYKLFPSCVPSFGFRHLLSLTDKVDRFNEEVQKQKVSRNRDAPEGGFDAILQAAVCKEKI
GWRKEASHLLVFTTDDVPHIALDGKLGGLVQPHDGQCHLNEANEYSASSQLDYPSLALLG
EKLTENNIHLIFAVTKSHYVLYKNFTALIPGTTVEILHKDSKNIIELIVKAYNSIRSKVE
LTVWDSPEDIGLTFTATCQDGLSYPGLRKCGDLKIGDTVSFEVAVEARSCPAEDTSHAFT
IKPAGFRDTLEVTVTYNCLXGLAARASGKWSGNGTYACGLCECDAGYLGARCECEEGASG
DMHHAMCREAEGKPLCSGRGECSCNQCLCYESEFGNIYGPFCECDDFSCARYKGVLCSGH
GECHCGECKCHAGYIGDNCNCSTETDGCVSSDGQMCSGRGTCICGKCQCTEPGAFGETCE
KCPTCPGVCSTKRDCIECKLFNSGRLADNQTCQKHCKDEIITTVDVLETDDPNAILCAYP
VNNCVMKFTYLELASGKSNLTVLKEPACSSAPSAVTIVLAVIGSVVLIGIILLGLWKLLV
TIHDRREFDRFQSERSRARYEMASNPLYRKPISTHNVEFTFNKLNKSYNGTVD
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggatctctccctgtccatgaacgacgatctagacaatattcgcaatctggggaccaag
ctggctgaagagatgcgaaagctgactagcaatttccggttggggtttggctctttcgtg
gacaaaaacatttctcctttctcctacacggcaccaagataccaaaacaatccctgcatt
ggttacaagctgttccccagctgtgtcccatcctttggcttccgccacctcttgtcccta
acggataaagtcgaccgtttcaatgaagaagttcagaaacagaaggtttcccgcaaccga
gatgctccagagggcggtttcgatgcaattttgcaggctgctgtgtgcaaggagaagatc
ggctggcgtaaggaggcatctcacctgctggtcttcacgacggatgacgtgccccacata
gccctggatgggaagctgggggggctggtgcagccccatgatggccagtgccacctgaac
gaagccaatgagtacagtgcgtccagccagctggattatccttccctggcgcttcttggg
gagaaactcactgaaaacaacatccacctgattttcgctgttacaaaaagtcattacgtc
ctgtacaagaactttacagccttgattcctgggacaacagtggagattttgcacaaagac
tccaagaatatcatcgagctgatcgtcaaggcctacaacagtattcggtccaaggtggag
ctcacggtctgggacagccctgaggacattggcttgaccttcactgccacatgccaggat
ggtttgtcctatcccgggctcaggaagtgcggggatctcaaaataggagatacggtttcc
ttcgaggtggccgtggaggcacggagctgccccgccgaggacacttcccatgccttcacc
atcaagcccgctggctttcgggacacgctggaggtgacagtgacctacaactgcctcnnt
ggcctggcagcccgggcgagtggcaagtggagtggcaacgggacttacgcctgcgggctg
tgcgagtgcgatgctggctacctgggggccaggtgcgagtgcgaggagggcgccagcggg
gacatgcaccatgccatgtgccgggaggcagagggcaaacccctctgcagcgggagaggg
gagtgcagctgcaaccagtgcctctgctacgagagtgagttcggaaacatctacggaccc
ttctgcgagtgcgatgatttctcctgcgccaggtacaagggagtcctctgctcaggccac
ggagaatgtcactgcggggagtgtaagtgccacgccggttacatcggggacaactgcaac
tgctccaccgagacggatggctgcgtttccagcgatgggcagatgtgcagcggcaggggc
acctgcatctgtgggaagtgtcagtgcactgagccgggggcttttggagagacgtgtgag
aagtgtcccacctgcccaggtgtctgtagcactaaaagggactgcattgaatgcaagctg
tttaactcaggaagactggctgataaccaaacctgccaaaagcactgcaaggatgagatc
atcaccaccgtggatgttctcgaaacggatgacccaaacgcgatcctctgcgcctaccca
gtgaacaactgcgtcatgaagttcacttacttggagcttgccagtgggaaatccaacctc
accgtcctcaaagagccagcgtgcagctcagcgcccagcgctgtgaccatcgtgctagca
gtgatcggcagcgtggtgctgattggcatcatcctgctggggctctggaagctgctcgtc
accattcacgacagacgggagtttgaccgattccagagtgaacgctcacgggcgagatac
gaaatggcatccaatcctctctaccgaaagcctatttccacacataacgtagagttcacg
ttcaacaagctcaacaagtcttacaatggtacggttgactga
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