Geobacter sulfurreducens PCA: GSU0921
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Entry
GSU0921 CDS
T00155
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gsu
Geobacter sulfurreducens PCA
Pathway
gsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSU0921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsu03019
]
GSU0921
03009 Ribosome biogenesis [BR:
gsu03009
]
GSU0921
Enzymes [BR:
gsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GSU0921
Messenger RNA biogenesis [BR:
gsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GSU0921
Ribosome biogenesis [BR:
gsu03009
]
Prokaryotic type
rRNA processing factors
GSU0921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AAR34248
UniProt:
Q74EP1
LinkDB
All DBs
Position
complement(986116..988542)
Genome browser
AA seq
808 aa
AA seq
DB search
MAKKMLINVMHPEESRVAIVEDGKLVDLDIEIEGSEQTRGNVYKGVVVRVEPGLQAAFVD
IGLKRLGFLQMGEIHPSFWQWRSDIPEESRSRRPRIQEVIRRGQELIVQVEKGERDMKGA
ALTTYMSFPGRYMVLMPGSDSAGISRKVESESDRKKLKEKVAELEIPEGYGYIVRTEALG
KTKTELAKDLQYLVKLHQGIVDKAAAAKGPTLLHRELDVVIRTIRDYFTAEIDEVLVDSK
DVYKQAREFFKQTMPKFEKLVKLHTEKRPIFSRYQIEEQIDLIYEKKVPLKSGGYLIIEP
TEALVSIDVNSGKTTGEKGVEDTAYKTNLEAAEEAARQLRMRDLGGLIVLDFIDMRDKKH
ITAVEKTLKAALKGDKARVTVGRISQFGMLEMSRQRIRQTLEQGSTLECPHCSGRGKVKS
VENMALSFLRKVHAAAAKGTVAEVHGGLPLEVAYYLLNRKKRELAQIENEYDIVVTVKGK
TSFLMNQLELELVRREKPAHVETHEEHAEKVAEALAEGLPEAAEGTDVPAEASTAETEGK
KKKRRRSRRKGKAEAEEMVESVAAAEIEEPEELEAGGGEEPEAAAGEETAEGEAPGEEAR
KKRRRKRRRGKKAKADETAAEEASAPEIAEEPAEEETTEAPIPAEEAGEASEEVKKKRRR
RKRRTPKRAGEATEAPATEVEPAEPRAAEPEPELAPAEASPESAEPAPKKTRAPRSRKKA
AEKPEKTEPAVALPEEQQAPAAAEATPVTPAEAKPAKKRATRKKTTSEPAPAPVQPPVPE
PAADEPPKKKRAPRKKKEAPTEGTPEAG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagatgctcatcaacgtgatgcatccggaggaatcacgcgtcgccatcgtt
gaagacggcaagctggttgatctggacatcgaaatcgaggggagcgaacaaacccgaggc
aacgtctacaagggggtggtggtccgggtggaaccgggactgcaggccgccttcgtcgac
atcggactgaaacggctcggcttcctccagatgggggaaatccatccctcgttctggcaa
tggcgcagcgatatccccgaagagagccgcagccgccgtccccgcatccaggaagtcatc
cgccgggggcaggagctcattgtccaggtggaaaagggcgaacgggacatgaagggcgcg
gctctgaccacctacatgtcgtttccgggccgctacatggtgctcatgcccggcagcgac
tcggcgggcatttcccgcaaggtggagagcgagtccgaccggaagaagctcaaggaaaag
gtggccgagctggaaatccccgaaggctacggctacatcgtccggaccgaggccctgggc
aagaccaagacggaactggccaaggatctccagtacctggtgaagctccaccagggcatc
gtggacaaggcagccgcggccaagggccccactcttctccaccgggaactggacgtggtc
atccgcaccatccgcgactacttcaccgccgagatcgacgaagtgctggtggacagcaag
gacgtctacaagcaggcccgcgaattcttcaagcagaccatgcccaagttcgagaagctg
gtgaagctccacacggaaaagcgccccatcttctcccgctaccagatcgaagaacagatc
gacctcatctacgaaaagaaagttcccctcaaatcgggcggctacctcatcattgagcca
accgaggccctggtatccatcgacgtcaactcaggcaagaccaccggcgagaagggggtc
gaggacaccgcctacaagaccaatctggaagcggccgaagaggctgcccgtcagctgcgg
atgcgcgacctgggcgggctcatcgtgctcgacttcatcgacatgcgggacaagaagcac
atcaccgccgtggaaaagaccctgaaggcggccctcaagggtgacaaggcccgggtcacg
gtggggcgcatttcccagttcggcatgctggagatgtcgcgccagcggattcgccagacc
ctcgaacagggaagcaccctcgaatgcccgcactgcagcgggcggggcaaggtgaagagc
gtcgagaacatggcactctccttcctgcgcaaggtccacgccgcagcggccaaggggacc
gtggccgaggtgcacggcgggcttcccctggaggtcgcctactacctgctgaaccgcaag
aagagggaactggcccagatcgagaacgagtacgacatcgtcgtgaccgtgaagggcaag
acctcgttcctgatgaaccagctggaactggagctggtcaggcgcgaaaagccggcccac
gtggaaacacatgaagagcacgcggagaaggtggcagaggcgctcgccgaagggctgccc
gaagcagccgaagggaccgacgtcccggccgaggcatcgacagccgagaccgagggcaag
aaaaagaaacggcgccgcagccgccggaagggcaaggccgaagccgaagagatggtagag
tccgtagcggctgctgaaatcgaagaacccgaggagctcgaagccggcggcggagaagaa
ccggaggccgcggctggcgaagaaacggcggaaggggaggctccgggcgaagaagccagg
aagaagcggcggcgcaagcggcggcgcggcaagaaggcaaaagcggacgaaaccgcggcc
gaagaagcttcagccccggagatcgccgaagagccggcagaagaggagaccaccgaagcg
ccgatccctgccgaagaagcaggagaagcttcggaagaggtgaagaagaagcggcggcgg
cgcaagcgccggaccccaaaacgtgccggcgaggcgaccgaggcgccggcaacggaagtg
gagccggctgagccccgtgccgcggagcccgaaccggagctcgccccggccgaagcgtcc
ccagaaagcgccgagcccgctcccaaaaagacgcgcgcgccccgcagccgcaaaaaagcg
gccgaaaagcccgagaagaccgagcccgccgtggctctccccgaggaacagcaggcgcct
gccgcagctgaagcgaccccggtcacgccggccgaagcaaaaccggcaaaaaaacgggcc
acgcgcaaaaagaccacctccgaaccggcacccgccccggtacagccccctgtcccggag
cctgccgctgacgagccgcccaagaaaaaacgggctccgcgcaaaaagaaagaagccccg
acagaaggaacaccggaggcaggatag
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