Geobacter sulfurreducens PCA: GSU1137
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Entry
GSU1137 CDS
T00155
Symbol
rny
Name
(GenBank) endoribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
gsu
Geobacter sulfurreducens PCA
Pathway
gsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSU1137 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsu03019
]
GSU1137 (rny)
Messenger RNA biogenesis [BR:
gsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GSU1137 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
DivIVA
KH_KhpA-B
KH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AAR34513
UniProt:
Q74E27
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All DBs
Position
1220253..1221815
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AA seq
520 aa
AA seq
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MKIELAIIFIVLAAGAGFLIGNLLRKKLSDSLVSKAEELASRIVEDAKREAETISKEAAL
QAKDVVYQAKADFEREAKEKHKDLQTLEKRLQQKEENLDKKMNLFDQRDADLTKKEQGIL
AREQSLNRKEESLDALVAEQRAKLEQISGMSSAEAKKILMDAMESEAKLDAAKRIKAIEE
EARETADKKSKEIISLAVQRYAGEYVAEKTVSVVALPSDEMKGRIIGREGRNIRALEAAT
GIDLIIDDTPEAVILSGFNPVRREVAKIALEKLITDGRIHPGRIEEVVAKAEEEVEQAVK
EAGDQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLCGIMASELGINVKQ
AKRAGLLHDLGKAVDHEVEGSHAVIGAELARKYGESPKIVHAIMAHHEDEKPNSILAVLV
QAADALSGARPGARREMMETYVKRLEDLERISCSFGGVNNSFAIQAGREIRVMVSSEEVS
DERAVLLAKDIAKKIEAEMTYPGQIKVNVIRETRAIEYAR
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgaagatagaactggcaattattttcatcgtcctcgcggcaggagcgggatttctgatt
ggaaacctgctgcgcaagaaactctctgattctctggtaagcaaggccgaagaactcgcc
tcccgcatcgtagaggatgccaagcgcgaagctgaaacgatcagcaaggaagccgccctt
caggccaaggatgtcgtctatcaggcaaaagccgatttcgagcgggaagcaaaggaaaag
cacaaggatcttcagactctggaaaagcgccttcagcagaaggaagagaacctcgataaa
aagatgaaccttttcgatcagcgcgatgccgacctgacgaagaaggagcagggtatcctt
gcgcgggagcagtctctcaaccggaaagaggaatcccttgatgcgctcgtggccgagcaa
cgggcgaagcttgaacagatttccggcatgagctcggccgaagccaagaagatcctcatg
gacgccatggagagcgaggcgaaacttgatgcagccaagcggatcaaggccatcgaagag
gaggcccgcgagactgcggacaagaaatccaaggaaatcatttctcttgccgttcagcgg
tatgcgggcgagtacgttgccgaaaagaccgtatcggtggtagccctcccctccgacgaa
atgaaggggcgaatcatcggtcgtgaaggccgcaatatccgggcccttgaggcggccacc
ggcatcgacctcatcatcgacgatacccccgaggcggttattctttcaggcttcaatccg
gttcgccgagaagtggcaaagatcgcccttgagaaactcatcactgacgggcggattcac
cccggccgcatcgaagaagtggtggccaaggcagaggaggaagtggaacaagccgtcaag
gaagctggtgatcaggcggcctttgacctcggagtacacggcatccatcctgaaatcctc
aagctcatcggccggttgaaataccgcacgtcttacagccagaatgtttaccagcattct
cttgaggtcgccttcctctgcggcatcatggcctcggagttgggcatcaacgtcaagcag
gcaaagcgcgccggtctgctccatgacctgggcaaggcggtggaccatgaggttgaagga
tcccacgcggtcatcggcgctgaacttgcgcgtaaatatggtgagtcacccaaaattgtc
cacgccatcatggctcaccacgaggatgaaaagccgaattcgatcctcgccgtcctcgtt
caggccgctgacgccctctcaggcgcacggccgggggcgcgccgggaaatgatggaaaca
tacgtgaagcggcttgaggaccttgaacggatatcctgttcctttggcggtgtgaacaac
tcctttgccattcaggccggcagagaaatccgcgtcatggtatcgagcgaagaggtctct
gacgagcgggctgttctgctggccaaggacatcgccaagaagatcgaggccgagatgacc
tatcccggtcagatcaaggtgaatgttatccgggaaacccgcgccatagagtatgcccgt
taa
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