Geobacter sulfurreducens PCA: GSU2862
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Entry
GSU2862 CDS
T00155
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta-prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gsu
Geobacter sulfurreducens PCA
Pathway
gsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GSU2862 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsu03021
]
GSU2862 (rpoC)
03400 DNA repair and recombination proteins [BR:
gsu03400
]
GSU2862 (rpoC)
Enzymes [BR:
gsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GSU2862 (rpoC)
Transcription machinery [BR:
gsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GSU2862 (rpoC)
DNA repair and recombination proteins [BR:
gsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GSU2862 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AFP20505
UniProt:
I7EPD8
LinkDB
All DBs
Position
complement(3133876..3138063)
Genome browser
AA seq
1395 aa
AA seq
DB search
MEDFFSFFDKPKDPLHFSAIRISISSPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDISLKDLEKVLYFEAYAVTSPGDTGLSMAEVLTEDRYLKAREEHGDRFEAGM
GAAAIRDCLKALDLDQLAEQLRIEMMEATSEAKRKKTAKRLKVVEAFKESGNRPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKERPEVWDVLEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQVEA
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTRERNFAKGEGKIFSSPDEVRIAFDAG
EVDIQARIKVRMKNVQADEQELPEIIDTTVGRIILREILPEVIPYSAINKVMSKKELTNL
IDVCYRLAGNKETVILADRLKETGFRYSTLAGISICMNDMVIPEGKQVIIEKATEEVQEI
QNQYTEGLITDGERYNKVIDIWAKATEEIAKEMLDNLSKDTVVSPEGQEIKIPSFNSIHM
MADSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIITENDCGTLDGLVVSALTEGGEIIEHIGDRILGRVA
LDDILDPVTGEVLVAASQEIDENLVKKVEDSGLERVKIRSVLTCQSRRGICAKCYGRDLA
RGHLVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRHAEQTSLEARTEGRVKFININ
SVVNSEGHHIVMNRNGELAVVDETGREREKYAIVYGAKIKAGPDHVVKPGETLAEWDPYT
IPILTEVTGRIKFGDIVEGVTMEEQLDEVTGLSRKVIIESRDPDKRPRITIKDEAGKTVK
ISEIAMGRYFLPVGANISVQEDSFVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKP
KDFAVISEIDGLVTFGKDAKGKRKVIVTPEMGEPKEYLIPKGKHISVHENDYVRAGEALM
DGSSNPHDILRVLGLKELARYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKDVGD
TSFLIDDQLERSVFEEENDRVLTKGGRPAIAEPLLLGITKASLSTESFISAASFRETTKV
LTQAAIEGKVDSLRGLKENVIMGRLIPAGTGLSRYRNLKLVAEQAAVEEFEVVEPMRPQD
DFDVDMEDDVDSFDE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
ttggaagattttttcagcttttttgataaaccgaaagacccgcttcacttctcggccatt
cgcatctccatttcgtccccggacaagatccgcgaacgctcttttggggaggtcaagaag
ccggagaccataaactaccggacgttcaagccggagcgcgacggtctcttctgcgccaag
atattcggtcccaccaaggactatgagtgcaactgcggcaagtacaagcggatgaagcac
cgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcccctcgaaagtgcgtcgcgag
cgtctcggtcacatcgaccttgccacgcccgttgcccatatctggttcctcaagtctctc
ccgtcgcggatcggcaacctgctcgacatctctctaaaggatcttgagaaggtgctctat
ttcgaggcgtatgccgtgaccagccccggagacacggggctttccatggctgaagtcctg
acggaagacaggtatctcaaggcccgtgaggagcatggcgaccgcttcgaggccggcatg
ggagctgcggcgatccgcgactgcctcaaggccctcgatctggaccagcttgctgaacag
ctccggatagagatgatggaggcaaccagtgaggccaagcggaagaagaccgccaagcgc
ctcaaggtagttgaggcgttcaaggagtcgggcaaccgccctgagtggatgattctggag
tgcattccggtcctcccgccggaactccgtcccctggttccgctggatggcggccgtttc
gccacttcggacctgaacgatctttaccggcgtgtcattaaccgcaacaaccgcctcaag
cgcctcatggaactgcaggctccggaggtcatcatccgcaacgagaagcggatgcttcag
gaagcggttgatgccctgttcgacaacggccgccgtggccgcgccattgccggtcccaac
aagcgccccctcaagtccctttcggacatgttgaaagggaaatcgggccgcttccggcag
aacctgctcggtaagcgggtcgactattcgggccgttcagttatcgtagtgggccccgag
cttcgcctgcatcagtgcggccttcccaagaagatggctctggagctcttcaagccgttc
atctataacaagctggaggagaggggcttcgtcaccaccatcaagagcgccaagaagatg
gtggagaaggagcggcccgaggtgtgggacgtgctcgaagaggttatcaaggagcacccg
gtcatgcttaaccgggcgccgaccctgcaccgtctcggcattcaggcctttgagccggtg
ctcatcgaaggcaaggcgatccagctccatccgctcgtttgtaccgcgttcaacgccgac
ttcgacggtgaccagatggcggttcacctgccgctttccatcgagagccaggtggaagcc
cgtgtactcatgatgagtaccaacaacatcctctcgcctgcccatggcaagccgatcatc
gtgccgtcccaggacatggttctcgggatttactacatgacgcgcgagcggaatttcgcc
aaaggcgagggcaagatattctcgtctcccgacgaggtccgcatcgctttcgacgcgggc
gaggtcgacatccaggcccgcatcaaggtccggatgaagaacgtccaggccgatgagcag
gaactgcccgagatcattgacaccaccgtcggccggatcattctgcgggagattctgccc
gaggtgattccttactccgccatcaataaggtgatgagcaagaaggagcttacgaacctg
atcgacgtctgctaccgcctggcgggtaacaaggagaccgttatcctggccgaccggctc
aaggaaaccggtttccgctactcgaccctggcgggtatctccatctgcatgaatgacatg
gtgatcccggaagggaagcaggtgatcatcgagaaggcgactgaagaggttcaggaaatc
cagaaccagtacaccgagggtctcattacggatggcgagcgctacaacaaggttatcgac
atctgggcgaaagccacggaggagattgccaaggagatgctcgacaacctctccaaggac
acggtcgtttccccggaggggcaggagatcaagattccgtccttcaactccatccacatg
atggccgattcgggtgcccggggttcggcccagcagattcgccagcttgccgggatgcgg
ggcctcatggccaagccgtcgggcgagatcatcgagacgccgattaccgccaacttccgc
gaaggtctgaacgtactccagtacttcatttcgacgcacggcgcccggaaaggtctcgcc
gacacggccctcaagaccgcaaactccggctacctcacccggcgactcgtggacgtggcg
caggatgccataatcaccgagaatgactgcggtaccctcgacgggcttgtcgtctccgcc
ctcaccgaggggggagagatcatcgagcacatcggcgaccgcatcctcggccgggttgca
cttgacgatatcctcgatccggtcaccggcgaggttctcgtcgcagcaagccaggagatc
gatgaaaacctggtgaaaaaggtcgaggactcggggcttgagcgagtcaagatccggtca
gtgctcacctgccagagcaggcgcggtatctgcgccaagtgctatggccgcgacctggct
cgcggtcacttggtcaacctcggtgaagcggtcggcgtcattgccgcccagtcgatcggc
gagccgggtacgcagctcaccatgcgtaccttccacatcggtggtaccgcatcgcggcat
gccgagcagacctcgctggaagcccggaccgagggacgcgtgaagttcatcaatatcaac
agcgttgtcaactcggaagggcaccacatcgtcatgaaccgcaacggtgaactggcggtt
gtcgatgagaccggccgcgagcgcgagaaatacgccatcgtctatggtgccaagatcaag
gctggtcccgaccatgtggtcaagccgggcgagacccttgccgagtgggacccctacacc
atccccatcctcactgaggttactggtcggatcaagttcggcgacatcgtcgaaggggta
accatggaggagcagctcgacgaagtcaccgggctttcccgcaaggtgatcatcgagtcc
cgcgatcccgacaagcggccacgtatcacgatcaaggacgaggccggcaaaaccgtcaag
atcagtgaaatcgccatgggccgctatttccttccggttggcgccaatatctcggtccag
gaagactcttttgtcaacgctggtgacgttatcgccaagattccgcgggagaccaccaag
accaaggatattacgggcggtctgccccgcgttgccgagcttttcgaagcccgcaagccg
aaggactttgccgtcatttcggaaatcgacggtctcgtcactttcggcaaggatgctaag
ggcaagcggaaggtcatcgttacccctgagatgggtgagcccaaggaatacctcatcccc
aaaggcaagcacataagtgttcatgagaacgattatgtgcgggccggtgaggctctgatg
gacgggtcatccaatccccacgacatcctgagggtcctcggcctcaaggagctcgcgcgg
tacctcgtcgacgaagttcaggaagtctaccggctccagggcgtcaagatcaacgacaag
cacattgaggtcattgtccgccagatgctgcgccgcgttcgcatcaaagacgtgggggac
acgagcttccttatcgacgatcaactcgaacggtctgtgttcgaggaggaaaacgatcgt
gtcctcactaaaggaggacggccggccatcgctgagccgctgttgctcggtatcaccaag
gcgtctctctcgacggagtcgttcatatcggcggcttccttccgggagacgacaaaagtg
ttgacacaggctgccattgaaggtaaagtcgacagccttcgtgggcttaaggaaaatgtt
attatgggccggctcatccctgctgggactgggctttctcgttaccgtaacctcaagctt
gttgccgagcaggctgccgttgaagagtttgaggtggttgagcccatgcggccccaggat
gactttgatgtcgacatggaggatgatgtcgactcgtttgacgagtag
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integrated database retrieval system
