Geobacter sulfurreducens PCA: GSU2863
Help
Entry
GSU2863 CDS
T00155
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gsu
Geobacter sulfurreducens PCA
Pathway
gsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GSU2863 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsu03021
]
GSU2863 (rpoB)
03400 DNA repair and recombination proteins [BR:
gsu03400
]
GSU2863 (rpoB)
Enzymes [BR:
gsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GSU2863 (rpoB)
Transcription machinery [BR:
gsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GSU2863 (rpoB)
DNA repair and recombination proteins [BR:
gsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GSU2863 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
OTCace_N
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AAR36255
UniProt:
Q748Y6
LinkDB
All DBs
Position
complement(3138153..3142265)
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSIANNQLLRKNFAKIKKIIDIPNLIDIQKNSYKRFLQIDTPPEARKNSGLEAVFKSV
FPIKDFSDTASLEYVTYTLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSI
RDIKEQEVYFGEIPLMTENGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA
RVIPYRGSWLDFEFDHKDILFVRIDRRRKMPATVLLKALGYSAEALLNYFYKSEEILVAA
EGMWKKADPELLASQKASVDIVAPKTGEVLLKANRKFTKAAIRKMTEHGITQIPITMEEV
LGKYASNDIVDPSTGEVIVECNDEITQARLDDIKAKGITEFKVLFIDNLHVTSSLRDTLI
ADKIAATEEALIEIYRRLRPGDPPTLKSAQALFENLFFNAERYDLSAVGRLKLNFKLGLN
VPLDCQTLTKDDVLEVVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRME
RAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYR
IVQDGKVTSDVKFFSALEEEGHAIAQANAEMDADGRFVNEYVSARKSGEFLLVHRDELEL
MDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLKADSPLVGTGMERVVAKDS
GVSVVARHTGIVESVDASRIVVKIDEDEFDETGTGVDIYNLIKFARSNQNTCINQRPVVK
VGDHVKRGDVIADGPSTDMGELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIH
IEEFECVARDTKLGKEEITSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGE
TQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDSRTEMIERME
EDKLRKDEQDEIRIIRNSAVGKLKKLLVGKSAAVKVEDKSGRTVIAKGAAITEEALDAIP
LDRWDEISVSGEAGVDEKVSAILQTLQQQIDIIRYVFDDKVQKLKRGDDLPPGVIKMVKV
YIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQI
LETHLGWAAKGIGWKIEEMLESYSPADHIKGYLKDVYGTTEMDTFLDSLDKDELMNVAKR
LQRGVAMASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKL
HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKS
DDVAGRTRMYEAIVKGKHTLEPGLPESFNVLIKELQSLCLDVELLEGDED
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcaattgcgaataaccagcttctgcgcaagaatttcgccaagatcaagaag
atcatcgacatccccaatctgattgacatccagaagaattcctacaaacgattcctccag
atcgacactccccccgaggcccgcaagaacagtgggcttgaggcggtttttaaaagcgtc
tttcccataaaggatttcagcgatactgcctcgcttgagtacgttacctatactcttggc
gctcccaagtatgatgttgaggagtgccaccagcgcgggatgaccttcgccgctcccatg
aaggtgaaggttcggctcgtggtctgggacgtgaataaggataccggcgtccgttccatc
cgcgatatcaaggagcaggaggtctacttcggcgagatcccgctcatgaccgagaacggt
acgttcatcataaatggtacggagagggttatcgtcagccagctccaccgctcaccgggc
gttttctacgaccatgacaaaggcaagacccactccagtggcaaggtgctttattcggca
cgggtaattccctaccgcggctcctggctcgatttcgagttcgaccacaaagatatcctc
ttcgtgcggatcgaccgccgccgcaagatgccggcgaccgtgctgctcaaggcacttggc
tattccgccgaagctctgctgaactacttttataagagcgaagagatcctcgtcgccgcc
gagggcatgtggaagaaagccgatccggagctgctcgcgagccagaaggcatctgtcgac
atcgttgcgcctaagacgggcgaagtgctgctcaaggccaaccgcaagttcaccaaggca
gcaatccgcaagatgactgagcacggcatcacgcagattccgattaccatggaggaagtg
ctcggcaagtatgcctccaacgatatcgttgacccgtccaccggggaagtcatcgtagag
tgcaacgacgagatcacccaggcgcgcctcgatgacatcaaggctaaggggatcactgag
ttcaaggtgctcttcatcgacaacctccatgtgacttcatcgcttcgcgatacgctcatc
gccgacaagattgcggcaacggaagaggctctcatcgagatttaccgccgcctgcgcccc
ggcgatccgccgaccctcaagagcgcacaggccctcttcgagaacctgtttttcaatgcc
gagcggtatgacctttctgccgttggtcgtctcaagctgaatttcaagcttgggctgaac
gttcccctcgactgccagacgctgacgaaagacgacgtgctcgaggtggtgcgctacctg
atcgacctcaagaacggcaagggcaccatcgatgacatcgatcacctgggtaaccgccgc
gtgcgcgccgtgggcgagctgctggagaaccagtaccggatcggcctcgtccgtatggag
cgggccattaaagagcggatgagtctccaggaggtcgagaacctcatgccgcacgacctg
atcaactccaagcccgtctcagcggtcgtcaaggagttcttcggttcgtcccagctctcg
cagttcatggaccagacgaaccccctctccgaggttacccacaagcgacggctctcggcc
ctcggaccgggcggtctgactcgcgaacgtgctggcttcgaggtccgcgacgtacacccg
acccactacggccgggtctgccccatcgagactcctgaaggtccgaacatcggtctcatc
gcgtccctctccacttacgcgcgcatcaatgagcacggctttgtggagaccccttaccgc
atcgtccaggacggcaaggtaacaagcgacgtcaagtttttctcggctctggaggaagag
gggcatgcaatcgcccaggccaacgccgagatggacgcagacggccgcttcgttaacgaa
tacgtatcggcccgcaagtcgggcgagtttctgctggtccaccgggacgaactcgaactc
atggacgttgctcccatgcagctcgtctccgtggccgcatcgctcatcccgttcctggag
aatgatgacgccaaccgcgcactcatggggtcgaacatgcagcgccaggccgtgccgctc
ctcaaggccgattcgcccctcgtgggcactggtatggagcgcgtcgttgccaaggattcc
ggggtgtcagtggtggcgcgccataccggcatcgtcgagtcggtcgatgcctctcgcatc
gttgtcaagatcgacgaggacgagttcgatgaaaccggcaccggtgtcgacatctacaat
ctgatcaagttcgcccgttcaaaccagaacacctgcatcaaccagcggccggtggtcaag
gtgggcgaccatgtcaagcggggcgacgtcattgccgacggtccctccaccgacatgggc
gaactcgcccttgggcagaatgtggttgttgccttcatgccgtggggcgggtacaacttc
gaggactccatcctcgtgtccgaaaagctcgtgaaggacgaccgctacacctcgatccac
attgaggagttcgagtgcgttgctcgcgacaccaaactcggcaaggaggaaatcacctcc
gatatcccgaacctcggcgaagaggccctaaaggacctggacgagtcggggatcatccgg
atcggtgcggaggtgaagccgggagacatcctcgtgggcaagataacccccaagggcgaa
acccagctttcgccggaggaaaagctcctccgtgccatcttcggcgagaaggcgggagat
gtccgcgatacctccctgcgcgtcccgccgggggtcgagggaaccgtcatcggggccaaa
atcttctcgcgcaagggggctgataaggactcccgtaccgagatgatcgagcggatggaa
gaggacaaactgcgcaaggatgagcaggacgagatccgcatcatccgcaattccgccgtg
ggcaagctcaagaagctcctcgtcggcaagtccgctgcggtcaaggtggaggacaagagc
ggccggaccgtcatcgccaagggtgccgccattaccgaagaggcccttgacgcgatcccg
ctcgatcgttgggacgagatttccgtgtccggcgaggcgggggtcgatgagaaagtgtcg
gcgattctccagacactccagcagcagatcgatataatccgttacgtgttcgatgacaag
gtccagaagctgaagcgtggcgacgacctgccgccgggcgtcatcaagatggtgaaggtc
tacatcgccatcaagagaaagctccaggtgggggacaagatggccgggcgccacggtaac
aagggtgtcgtctcccgtatcctccccgaagaagacatgccatacatggaggacggtcgt
ccggtcgagatcgttctgaaccccctcggtgttccgtcccgtatgaacgtgggccagatt
ctcgaaacccacttgggatgggcagccaagggcatcggctggaagatcgaagagatgctt
gaaagctactcgccggccgaccacatcaagggctacctcaaggatgtgtatggcaccaca
gagatggacacattccttgactctctcgacaaagacgagctcatgaacgttgcaaagcgg
ctccagcggggcgttgctatggcatcccccgtcttcgagggggcctcggaggagcagatc
cggagcatgctcgataaagccggatttgatgaaaccgcgcaggtttccctctatgacggc
aagagcggtgagcccttcaagcataaggtcaccgtcggggtcatgtatgtcctcaaactt
catcacttggtcgacgataagatccatgcccgctccattggaccctacagccttgtgacc
cagcagccgctcggcggcaaggctcagttcggcggccagcgcctcggggagatggaagtc
tgggccatggaagcctacggtgccgcctatgcgcttcaggaattcctgaccgtcaagtcc
gacgacgtggcgggccggacgcggatgtacgaggccatcgtcaaaggcaagcacaccctt
gagccggggcttccagaatccttcaacgttcttatcaaggaactccagtccctctgcctc
gatgtggaactgctcgaaggggatgaagactag
DBGET
integrated database retrieval system
