Geomonas subterranea: KP001_00965
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Entry
KP001_00965 CDS
T07936
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP001_00965 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsub03019
]
KP001_00965 (pnp)
03016 Transfer RNA biogenesis [BR:
gsub03016
]
KP001_00965 (pnp)
Enzymes [BR:
gsub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KP001_00965 (pnp)
Messenger RNA biogenesis [BR:
gsub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KP001_00965 (pnp)
Transfer RNA biogenesis [BR:
gsub03016
]
Prokaryotic type
tRNA degradation factors
KP001_00965 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_NusA_2nd
KH-I_KHDC4-BBP
KH_2
RdgC
Motif
Other DBs
NCBI-ProteinID:
QXE91142
UniProt:
A0ABX8LHK7
LinkDB
All DBs
Position
222916..225006
Genome browser
AA seq
696 aa
AA seq
DB search
MVHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKTAKEGQGFFPLTVN
YQEKAYAGGRIPGSFFKREGRPSDNETLTSRLIDRPIRPLFPEGFLNDTQIMATVMSADK
DHDPGILAMIGASAALMVSDAPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDMEIVIAAS
KDAILMVEGSASEVSEDDLLEAIFFGKEAVQGILAAQEELAAKVGVAKRDVPAPVVNEAL
KARVDALAKEEMKAAVRIKAKGERHDAIDAITEKTVAALAEEFEGSEKEVKAFIEDLEYN
LVREHIIKDGSRIDGRDTKTIRNIATEVGFLPRAHGSALFTRGETQSIVAATLGTSVDEQ
RIDSLYGDSRKKFLLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY
TIRIVSDITESNGSSSMATVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGDEYAILSDILG
DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMGAALAQAKAGRVHILGEMAKTLAT
PRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVAIDIEDTGKINIASNNKE
ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS
DILKEGDKVLVKCIGIDKQGKIKLSRKEALGQTFTE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggtacacactgtccaagcagagtgctgtggcaaaactatcactatcgaaacaggcaag
atcgccaagcaggcaagcggcgcggtcatgatcaaaagcggcgacaccatggtgctcgtc
accgccgtcgccatgaaaaccgccaaggaagggcagggcttcttcccgctcaccgtcaac
taccaggagaaagcgtacgcgggcggccgcatccccggctccttcttcaagcgcgaaggg
cgtccctccgacaacgaaaccctcacctcccgtctcatcgaccgcccgatccgtccgctg
ttcccggaagggttcctgaacgacacccagatcatggctaccgtcatgtcggctgacaag
gaccacgaccccggcatcctcgccatgatcggcgcttccgccgcactcatggtctccgac
gcccccttcgcgggccccattgccggcgtcaaagtcggccgcgtcgacggccagttcatc
gccaacccgaccgccgagcaggaagagaagagcgacatggagatcgtgatcgccgcctcc
aaggacgcgatcctgatggtggaaggtagcgcctccgaagtgtccgaggacgacctcctc
gaagcgatcttcttcggcaaggaagcggtgcaggggatcctggcagcgcaggaagagctg
gccgccaaggtcggcgtcgcaaagcgcgacgtcccggcgccggtagtgaacgaggccctg
aaagcccgcgtcgacgccctcgccaaagaggagatgaaggctgcggtccgcatcaaggcc
aaaggcgagcgtcacgacgccatcgacgccatcaccgagaagaccgtggcggcgctggcc
gaggagttcgaaggctccgagaaagaggtcaaggccttcatcgaagacctcgagtacaat
ctggtgcgtgagcacatcatcaaggacggctccaggatcgacggccgcgacaccaagacc
atccgtaacatcgccaccgaagtcggcttcctgccgcgcgctcacggctccgccctgttc
acccgcggtgagacccagtccatcgtggccgccaccctgggcacctcggtcgacgagcag
cgcatcgactcgctctacggcgattccaggaagaagttcctcctgcactacaacttcccg
ccgtactccgtcggcgagaccagcttccgcctcgccccggggcgccgcgaaatcggccac
ggcatgctggccgagcgcgcgctgcagcaggtgctcccgaagcacgacgacttcccctac
accatccgtatcgtctcggacatcaccgagagcaacggctcctcctccatggccaccgtc
tgcggcggctccatgtccatgatggacgccggcatcccgatcaaggcaccggtcgcgggt
atcgccatgggcctcatcaaggaaggcgacgagtacgccatcctctccgacatccttggt
gacgaagaccacctgggcgacatggacttcaaagtggccggtaccgccgaaggcgtcacc
gcgctgcagatggacatcaagatcggcggcgtgacccgcgagatcatgggtgccgcgctg
gcacaggcaaaggcaggccgcgtccacatcctgggcgaaatggccaaaaccctcgcgacc
ccgcgcggcgacctctccgctttcgcaccgcgcatcaccaccatctgggtcaaggtcgac
aagatccgcgacgttatcggtagcggcggcaagaacatcaggagcgtcaccgaggcgacc
ggcgtagccatcgacatcgaggacaccggcaagatcaacatcgcctccaacaacaaggaa
gcctgcgacctcgccatcaagatgatccgcaacctcaccgcggaagccgaagaagggaag
ctctacatgggcaccgtgaagaagatcatggagttcggcgcattcgtcgagatcttcccg
ggcaccgacggcctggtgcacgtctccgagctcgacaccgagcgcgtgaagaacgtgagc
gacatcctcaaggaaggggacaaggtgctggtgaagtgcatcggcatcgacaagcagggc
aagatcaagctctcccgcaaagaggctctgggccagactttcaccgaataa
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