Geomonas subterranea: KP001_03340
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Entry
KP001_03340 CDS
T07936
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gsub
Geomonas subterranea
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsub03019
]
KP001_03340
Messenger RNA biogenesis [BR:
gsub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KP001_03340
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
HDOD
TetR_C_6
Motif
Other DBs
NCBI-ProteinID:
QXE93004
LinkDB
All DBs
Position
761848..763008
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AA seq
386 aa
AA seq
DB search
MLKKTVAEIKDRDIVEAVFLVKEKIVAMAKNGKPYLTLKLMDKTGEVDAKIWDNADQVGS
LFDRNDFLAVKGKASVYLGKMQLIVSELKRVPEESVQLADFLPETASDIEAMVAQLHALV
ASLTDPDLARLLRSFFEDPELLAQYRTAPAAKGMHHVYLGGLLEHSLAVAKLVDAMVPLY
QGLNRDLLVAGALLHDIGKVREMTYLRCFDYSDEGKLIGHITIGVEMLQERIARLPGFPV
ELAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRW
TSYHRLYDRYFFKEKPPVEMGGEEPAEPAPLDGLEPSELMPETVPAPAAHAGEPQRPAPE
KGRQEQRGGEQGRKSFSNNPFAILKK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atcttgaaaaaaaccgttgccgaaataaaggaccgcgacatcgtcgaggcggtcttcctg
gtcaaggagaagatcgtcgccatggccaaaaacggcaagccgtacctcaccctgaagctg
atggacaagacgggggaggtggacgcgaagatctgggacaacgccgaccaggtcggctcc
ctgttcgaccgcaacgacttcctggcggtgaaggggaaggcgagcgtctacctcggcaag
atgcagctcatcgtctccgagttgaagcgggtccccgaggagtcggtgcaacttgctgat
ttcctgccggagacggccagcgacatcgaggccatggtcgcgcagctgcacgccctggtg
gcgagcctcaccgacccggacctcgcgcggcttttgcgctccttcttcgaggacccggag
cttttggcccagtaccgcaccgcacccgccgccaaggggatgcaccacgtctacctggga
gggcttttggagcactcgctcgccgtggcgaagctggtcgacgcgatggtgcctctctac
caggggctgaaccgcgacctcctcgtcgccggtgctcttttgcacgacatcggcaaggtg
cgcgagatgacctacctgcgctgcttcgactactccgacgaggggaagctgatcggccac
atcaccatcggcgtcgagatgctgcaggagcggatcgcccggctccccggcttcccggtg
gaactcgccatgctcctgaagcacatgatcctgtcgcaccacggccagtacgagtacggc
tcacccaagcgcccgaagacgctggaggcgaccatcctgaactacctggacgacctcgac
tccaagatcaacggcatcaggacccacatccgcaaggagccggacaacccgtcgcgctgg
acctcgtaccaccgtctctacgaccgctacttcttcaaggagaagccgcccgtggaaatg
gggggagaggagccggcagagcccgcacccctcgatggtctggagccgtccgagctgatg
ccggagacggttccggcccccgccgcgcacgcgggcgaaccgcagaggcccgctcccgaa
aaggggcgccaggagcagcgtggcggcgagcaggggcgcaagagcttcagcaacaacccc
ttcgccatcctgaagaagtga
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