Geomonas subterranea: KP001_08625
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Entry
KP001_08625 CDS
T07936
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP001_08625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsub03019
]
KP001_08625
Enzymes [BR:
gsub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KP001_08625
Messenger RNA biogenesis [BR:
gsub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KP001_08625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QXE92564
UniProt:
A0ABX8LPP4
LinkDB
All DBs
Position
1986907..1988331
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AA seq
474 aa
AA seq
DB search
MKFSELQLPELVQKGIDETGFTDCTPIQEKALPLSLTGKDVAGQAQTGTGKTATFLITVF
TKLLSQQKTGAVNHPRALILAPTRELVVQIEKDAQALGKHTGFTIQAIYGGVDYMKQRDA
LKAGADIVIGTPGRLIDYLKQKVYSLKDIEALVIDEADRMFDMGFIADLRFILRRLPPYD
KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVARKEKFPLLLGL
LRKMGMERTMIFVNTKREAEYLQDRLNANEFPAKVISGDVEQRKRMKILSDFKAGLLPIM
IATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFFIEA
IQEFIKQKIPTEWAEDDMFVHDYKRTARPPRRTDEKTGGRGGKSGERGGKPGRGESRGRG
GKPVEKKKEVAGKPAPDEIKEVAAAEGDAEGAAKRKRRRRKPKAKTTEQQPEQP
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagagctgcagctgccggaactggtccagaaagggatcgatgagaccggc
ttcaccgactgcacaccgatacaggaaaaggcgctgccgctttccctcaccggcaaggac
gtcgctggccaggcccagaccggcacaggcaagaccgctaccttcctcatcaccgtcttc
accaaactgctgagccagcaaaagaccggcgcagtcaaccatccccgcgctctcatcctc
gcccccacccgcgaactggtggttcagatcgagaaggacgcgcaggccctgggcaaacac
accggcttcaccatccaggccatctacggcggcgtggactacatgaagcagcgcgacgcg
ctgaaggccggcgccgacatcgtcataggcacccccggacgcctcatcgattacctgaaa
cagaaggtctactcgctcaaggacatcgaggccctggtgatcgacgaggcggacaggatg
ttcgacatgggcttcatcgccgacctgcgcttcatcctgagaagactccccccctatgac
aagcgccagaacctcctcttctccgctaccctgaacacccgcgtcatggagctcgcctac
gagttcatgaacatgccggagaaggtctcggtgacgccggagcagatgaccgccgaacgc
gtggagcaggtgctctaccacgtggcgcgtaaagagaaattcccgctgctcctcggcctc
ctgcgcaagatggggatggaacggaccatgatcttcgtgaacaccaagcgcgaggcggag
tacctgcaggaccggctcaacgccaacgagttccccgccaaggtcatctccggggacgtc
gagcagagaaaacggatgaagatcctctccgacttcaaggcggggcttctgccgatcatg
atcgccaccgacgtcgcctcccgcggcatccacatcgagggcgtttcccacgtgatcaac
tacgacctgccgcaggactgcgaggattacgtgcaccgcatcggccgcaccgcccgcgcc
ggcgcggaagggatggcgatctcgctcgcggacgaggacggggccttcttcatcgaagcc
atccaggagttcatcaagcagaagatcccgaccgagtgggcggaggacgacatgttcgtc
cacgactacaagagaacggccagacctccccgccgcaccgatgaaaagaccggcggcagg
gggggcaaatccggcgagcgcgggggaaagcccggccgcggcgaatcgcgcggcagaggc
ggcaagccggttgagaagaagaaggaagtcgccgggaagccggcgccggacgagatcaag
gaagttgccgctgccgagggggacgctgagggtgccgccaagcgcaaacgccgtcgtcgc
aagcccaaggcgaagaccacggagcagcagcccgagcagccgtga
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