Geomonas subterranea: KP001_09280
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Entry
KP001_09280 CDS
T07936
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gsub
Geomonas subterranea
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsub03009
]
KP001_09280 (rlmD)
Enzymes [BR:
gsub01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KP001_09280 (rlmD)
Ribosome biogenesis [BR:
gsub03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KP001_09280 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
TRM5-TYW2_MTfase
TRAM
PrmA
Methyltransf_32
Methyltransf_11
TPMT
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QXE92689
LinkDB
All DBs
Position
2139232..2140575
Genome browser
AA seq
447 aa
AA seq
DB search
MLELHITSTNDEGFGVANHEGTRVLVAGGLPGEALVAKITYVGRRESFANIIKTLKASPD
RNPSPACKMGRACDGCGLMQMRYPAQLTWKKGLVTRQIRKFPSLSDAVIHDTIASPSELG
YRNTAKLVVAGKNNDPVIGIYRRNSHDVLEIADCALHHPLINKVVKAAKAGIKKGKVQIY
NPKSEMGLLRYLVVRVAEQSNRVMVVFVTTDEGYNEMHHLAKFIQQAVPEVAVVAQNINT
STGNVIFGHKDRSITKAQTLKAYIGDKSFNLSPHSFFQVNSGAARIIYEKVRDFARLTGK
ERVIDLYCGIGGISLFLADKAREVVGIEVVDAAVADATANAAMNRADNCSFEAGDAVHLI
DEIGQEGGADLIVLNPPRKGCDEKVLKSVAAIKPQRIIYVSCSPETLARDLDILAQLGYK
TLEVQPVDMFPQTVHVEDVALLEKAKG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgctggagctccacatcacctccaccaacgacgaagggttcggcgtcgccaaccacgaa
gggacgcgagttctggtggcgggcggtctccccggtgaagcgctggtggcgaagatcacc
tacgtagggcgcagggaatccttcgccaacatcatcaagaccctcaaagcctctcctgac
cgcaacccatcccccgcctgcaaaatgggaagggcctgcgacggctgcggcctgatgcag
atgcgctacccggcccagcttacctggaagaagggactggtcaccaggcagatccggaag
ttcccgtcgctttccgacgcggtgatccacgataccatcgcctcccccagcgagctcggc
taccgcaacaccgccaagctggtggtggcggggaagaacaacgacccggtgatcggcata
taccggcgcaacagccacgacgtgctggagatcgcggactgcgccctgcaccacccgctg
atcaacaaggtggtgaaggccgctaaggcggggatcaagaagggcaaggtgcagatctac
aaccccaagagcgagatggggctgctgcggtacctggtggtgcgggtggccgagcagagc
aacagggtcatggtggtcttcgtgaccaccgacgaggggtacaacgagatgcaccacctg
gccaagttcatccagcaggcggtgcccgaagttgccgtggtggcgcagaatatcaacacc
tcgaccggcaacgtgatcttcggccacaaggaccgctccatcaccaaggcgcagactctg
aaggcctacatcggggacaagagtttcaacctgtcgccgcattccttcttccaggtgaac
agcggcgcggcccgcatcatctacgagaaggtgcgcgacttcgcccgcctgaccggcaag
gagcgggtgatcgatctttactgcggcatcggtggcatctcgctgttcctcgcggacaag
gcgcgcgaagtcgtgggcatcgaagtcgtagatgcggcggtcgcggacgccaccgccaac
gcggccatgaaccgtgcggacaactgcagctttgaggcaggcgacgccgtgcatctcatc
gacgagatcggacaggaagggggcgccgacctgatcgtgctgaacccgcccaggaaaggt
tgcgacgagaaggtgctgaaaagcgtggcggctatcaagccgcagaggatcatctacgtc
tcctgttcgccggaaacgctggcgcgggacctggatatcctggcacagctcggctacaag
acgctcgaggtgcagccggtggacatgttcccgcagacggtgcacgtcgaggacgtggcg
ctgctggaaaaggctaagggttaa
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