Geomonas subterranea: KP001_10320
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Entry
KP001_10320 CDS
T07936
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03030
DNA replication
gsub03430
Mismatch repair
gsub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KP001_10320 (dnaE)
03430 Mismatch repair
KP001_10320 (dnaE)
03440 Homologous recombination
KP001_10320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsub03032
]
KP001_10320 (dnaE)
03400 DNA repair and recombination proteins [BR:
gsub03400
]
KP001_10320 (dnaE)
Enzymes [BR:
gsub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KP001_10320 (dnaE)
DNA replication proteins [BR:
gsub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KP001_10320 (dnaE)
DNA repair and recombination proteins [BR:
gsub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KP001_10320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
QXE92876
LinkDB
All DBs
Position
complement(2381329..2384805)
Genome browser
AA seq
1158 aa
AA seq
DB search
MDSPANFVHLHLHSQYSLLDGAIRIGDLVKKAKEYHMPAVAVTDHGNMFGSLEFFLKAQD
KGIKPILGCEVYIAPGSRLDKKAPTAADPVTSYHLILLAENMTGFKNLCYLSSAGYKEGF
YRRPRIDKELLEKHREGLICLSACLQGEIAYLAGRNKMEEAKAAAIWYADMFPGSYYLEI
QENGLPEQTIANRRVMEIARELNLPLVATNDCHYLNKEDAKAHEILLCIQTGKTMSDPSR
MRFTTEAFYVKSPEEMARDFHYCPEALENTVKIAERCHYEFDFKTYHFPAYEAPPGETLD
DQLERESIEGLKLRLEKIKIKYPDLTPEQEQAYHDRLRIELDCIRHMGFPGYFLIVADFI
NWAKDHGIPVGPGRGSAAGSLVAYCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQ
DRREEVIQYMVERYGREKVCQIAAFGTMAARGVIRDVGRALDLTFADVDKIAKLVPEVLG
ITLEKAIEQEPKLKELMAADAKVNEVMTVALRLEGLARHISTHAAGLVVAPRQMEDFCPV
YKDQKTGSLTTQYSMKYVEKVGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLLTDD
DPETYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDFI
ERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKDA
EQMAKERLKFMEGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAH
YPVEFMAALLTEDMSNTDKVIKSIGDCREMGIEVLPPDINESLRSFRVLDTAMRFGLGAV
KNVGEGAIEAILEARGDEPFKDIFDFCERVDLRRCNKRVIEALIKSGAFDCTKAKRAQLM
AVLEDAAAQGQRVQQERESAQVSLFGMAEIQRGSNGTGNRLPDIPEWDEKYRLGCEKEAI
GFFITGHPLDRYVADMRRFSNVDCSSINEAKDKSEVKICGVPASLKEIMTKKGDRMGFVT
LEDLAGSLEVVVFSDVYARCSEFLKGDDPVHITGTVEHGEKGAKIMASDIVLLRDLVERE
TRRVNFTIDAKEADAGKLKTLKEIISRYQGICRSFLHLDIENSSRVTIRLSDVYKVAASE
ELTVEVSNLFGYNAVSFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggattcaccagctaatttcgtacaccttcatctccactcccagtactccctgctcgac
ggcgccatccgcatcggcgacctggtcaagaaggccaaggagtatcacatgccggcggtg
gcggtcaccgaccacggcaacatgttcggttccctcgagttcttcctgaaggcccaggac
aaggggatcaagccgatccttgggtgtgaggtctacatcgcccccggctcccgtctggac
aagaaagcccccactgccgcagacccggtcaccagctaccacctcatcctgctggccgag
aacatgaccggtttcaagaacctctgctacctcagctccgccggctacaaggaggggttc
taccgccgcccccgcatcgacaaggaactcctggagaagcacagggaaggtcttatctgc
ctctccgcctgcctgcagggagagatcgcctatctggcgggcaggaacaagatggaggag
gccaaggctgccgccatctggtacgccgacatgttcccggggagctactacctcgagatc
caggagaacgggctccccgagcagaccatcgccaacaggcgggtgatggagatcgcgcgc
gagctgaacctgccgctggtcgccaccaacgactgtcactacctcaacaaggaagacgcc
aaggcgcacgagatcctgctctgcatccagaccggcaagaccatgagcgacccgagccgg
atgcgcttcaccaccgaggccttctacgtgaagagcccggaggagatggcgcgggacttc
cattactgccctgaggcgctggaaaacacggtcaagatcgccgaacgctgccactacgag
ttcgacttcaagacctaccatttccccgcgtacgaggcgccgccgggcgaaaccctcgat
gatcagctggagcgcgagtccatcgaagggctcaagctgcgccttgagaagatcaagatc
aagtacccggatctgaccccggaacaggagcaggcctatcacgaccgcctgcgcatcgag
ctggactgcatccggcacatggggttcccgggctacttcctcatcgttgcggacttcatc
aactgggccaaggaccacggcatcccggtaggtcccggcaggggctcggcggccggctcg
ctggtcgcctactgcatcaggatcaccgatatcgatcctatgccgtacaacttgctgttc
gagcgattcctgaacccggaacgtatctccatgccggatatcgacgtcgacttctgccag
gaccgccgtgaagaggtgatccagtacatggtcgagcgctacggccgggagaaggtatgc
cagatcgcggcgttcggtaccatggctgcccgcggtgtcatccgcgacgtcgggcgcgcc
ctcgacctcacctttgccgacgtggacaagatagccaagctcgtgcccgaggtcttgggc
attacgctcgagaaggcgatcgagcaggagccgaaactcaaggagttgatggcggccgac
gccaaggtgaacgaggtcatgaccgtcgcgctgcgcttggaggggctcgcacgccacatc
tcgacccacgccgccggcctcgtggtcgcgcccaggcagatggaagacttctgcccggtc
tacaaggaccagaagaccggctcattgaccacccagtactcgatgaagtacgtggagaag
gttggcctggtgaagttcgacttcctggggctcaagaacctcactgtcatcgataacgcc
tgcaagcacatccgtaacggcaaggatcccaacttcgacatcaccctgttgacggacgac
gatccggagacctacaaacttctgcaggccggcaacaccaccggggtattccagcttgag
tccagcggcatgaaggagcttctggtcaagctgaagccctcctgtttcgaggacatcatc
gcggtctgcgccctctaccgtccgggcccgctcggctccggcatggtggacgacttcatc
gagagaaagcatggtcgcaagcagactgtctacgacctgcctcagctcgaaccggtcctc
aaggacacctatggcgtcatcgtctaccaggaacaggtcatgcagatttcccgttccctg
gcaggctactcgctcggcggcgcggatctcttgcgccgcgctatgggtaagaaagacgca
gaacagatggcgaaggagcgcctgaagttcatggaggggtccgagaagctgggccttgat
tccaagaagtgcgcggccatcttcgacctgatggccaagttcgccgagtacggcttcaac
aagtcgcactccgccgcctacgctctggtcgcctaccagaccgcctacttgaaggcacac
tacccggtcgaattcatggccgccctcctcaccgaggacatgagcaacaccgacaaggtg
atcaagagcatcggcgactgccgcgagatgggcatcgaggtgctgccgccggacatcaac
gagtcgctgcgctccttccgcgtgctggacacggcgatgcgctttggtctcggcgccgtc
aagaacgtgggggagggggccatcgaggccatcctcgaggcccgcggcgatgagcccttc
aaggacatcttcgacttctgcgagcgggtcgacctgcgccgctgcaacaagagggtcatc
gaagcgctcatcaaaagcggcgccttcgactgcaccaaggcgaaacgagctcagcttatg
gccgtccttgaggatgccgccgcccagggacagcgcgtgcagcaggagcgcgagagcgcg
caggtgtctctctttggcatggcggagatccagcgcggttccaacggtaccggcaaccgc
ctccccgacataccggagtgggatgagaaataccggctcggctgcgagaaagaggcgatc
ggcttcttcattaccggccacccgctggaccgctacgtggccgacatgcgccgcttttcc
aacgtcgactgttcctccatcaacgaggcgaaggacaagagcgaggtgaagatctgcggt
gtccccgcgagcctcaaggagatcatgaccaaaaaaggcgaccgcatggggttcgtgaca
ctggaggacctggccggctcgctggaggttgttgttttctccgacgtctatgcccgctgc
tcggagtttcttaagggggacgacccggttcacatcaccggcacggtcgagcacggcgag
aagggggccaagatcatggccagcgacatcgttcttttgcgtgaccttgtggagcgggag
acgcgcagggtgaatttcaccatagacgcgaaagaagccgatgcggggaagctgaagacg
ctcaaagagatcatctcccgctaccaggggatctgtcgcagctttctccatcttgacata
gagaatagttcgcgcgtcaccatccgcctttcggatgtatacaaagtggcggccagcgaa
gaattaacagtggaagtgagtaacctcttcggctataatgccgtgtccttcgagtag
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