Geomonas subterranea: KP001_11610
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Entry
KP001_11610 CDS
T07936
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
gsub
Geomonas subterranea
Pathway
gsub00521
Streptomycin biosynthesis
gsub00523
Polyketide sugar unit biosynthesis
gsub00525
Acarbose and validamycin biosynthesis
gsub00541
Biosynthesis of various nucleotide sugars
gsub01055
Biosynthesis of vancomycin group antibiotics
gsub01100
Metabolic pathways
gsub01110
Biosynthesis of secondary metabolites
gsub01250
Biosynthesis of nucleotide sugars
Module
gsub_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
KP001_11610 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
KP001_11610 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
KP001_11610 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
KP001_11610 (rfbB)
00525 Acarbose and validamycin biosynthesis
KP001_11610 (rfbB)
Enzymes [BR:
gsub01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
KP001_11610 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
QXE89113
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All DBs
Position
complement(2668955..2670022)
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AA seq
355 aa
AA seq
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MQDLFTPTSLLVTGGAGFIGSNFINHFMAGNPGCRVINLDLLTYAGNLKNLTAVEGNASY
RFVKGDICDAELVARLLAEEKVDAVAHFAAESHVDRSITGPDIFVRTNVLGTQTLLEASR
LHAEKLPDFRFLQVSTDEVYGSLGAEGYFTEETPLAPNSPYSASKAGADLLVRAYFETFG
LPTLNTRCSNNYGPYHFPEKLIPLMIHNILKKRSLPVYGDGLNVRDWLHVKDHSAAIERV
LKRGRPGEIFNVGGNNEWKNIDIVKLVCDLMDERLGRAAGESRELITFVKDRKGHDRRYA
IDASKLKRDLSWEPSYTFERGIAETIDWYLANQGWVEEVVSGAYREYYETQYGAA
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatctgttcacccccacctccttactggttaccggaggggcgggattcatcggt
tccaatttcatcaaccacttcatggcgggcaacccggggtgccgggtgatcaaccttgac
ctcctgacctacgcggggaacctgaagaacctgacggcggtggagggaaatgccagctac
cgcttcgtgaagggtgacatctgcgacgccgagctggtggcgcgccttttggccgaggaa
aaggtcgatgccgtggcccattttgccgccgaatcgcacgtcgaccgctccatcaccggt
cccgacatcttcgtgagaaccaacgtgctggggacccagaccctgctggaggcgagcagg
ctgcacgccgaaaagctccccgacttccgcttcctgcaggtttccaccgacgaggtctac
ggcagtctcggcgccgaggggtacttcaccgaggagacgccgcttgcgcccaactccccg
tactccgccagcaaggccggcgccgacctcctggtgcgcgcctatttcgagacctttggc
ctgccgaccctgaacacccgctgctccaacaactacggtccctatcacttccccgaaaag
ctgatcccgctcatgatccacaacatcctcaagaagcgttcgctgccggtgtacggcgat
ggcctcaacgtgcgggactggctgcacgtgaaggatcactccgccgccatcgagcgcgtg
ctgaagcgggggaggccgggggagatcttcaacgtggggggcaacaacgagtggaagaac
atcgacatcgtgaagctggtctgtgacctgatggacgagcgcctggggcgtgccgccggc
gagagccgcgagctgatcaccttcgtcaaggaccgcaaggggcacgaccggcgctatgcc
atcgacgcctcaaagctgaaacgggacctctcctgggagccgagctacaccttcgagcgc
ggtatcgccgagaccatcgactggtacctggccaaccaggggtgggtcgaagaggttgtc
agcggcgcctaccgcgagtattacgagacgcagtacggggcggcataa
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