Geomonas subterranea: KP001_14730
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Entry
KP001_14730 CDS
T07936
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KP001_14730 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsub03400
]
KP001_14730 (recB)
Enzymes [BR:
gsub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KP001_14730 (recB)
DNA repair and recombination proteins [BR:
gsub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KP001_14730 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_11
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
QXE89687
UniProt:
A0ABX8LDF4
LinkDB
All DBs
Position
3374950..3378309
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AA seq
1119 aa
AA seq
DB search
MKRFDLLHTPLGGRNLIEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAATKEL
KERIRKKLKDAETAFDTGTSDDFLIAGLVERTADKAKARRLLASAVRGFDEAAIFTIHGF
CQRMLQDNPFESGSLCDTELLTDQGKILKEIAQDYWRINCYGEPVDRIAAADHARITPES
LLKLAKRVCSDPYARVIPDPPAGTEEVADWLLALRRNFFDYLRAELPKRKRLKNVRGFDD
LLGDLHTALTRPGSSLARLIRERFQAALIDEFQDTDPVQFAIFDAVYPVGHEAPFFLIGD
PKQAIYSFRGADIFAYLGAAEATEQRHTLLQNFRSEPGLIRAVNKLFTSRELPFLHEKIG
FNEVEAAPKERSILTEGGERKAPLTFWVAPRKEAGKPINKGEAWELLPETVASEIARILR
DGAAGKLTIEELRQDGEEERWVPRPVRPRDVAVLVRANRQARLMQQALSRRGIPSVLCSA
GNLFESDEAAELLRLLSAVAQPGHEALLRGALATELVGVTGSELAQLIDDEEKWEEVLEE
FREYHDTWNSSSCMAMALQFLERRKVRQRLLAGPMGERRITNVLHAIETIHQAQVKERLG
MEGVVAWLSCRVTEEPKKEEYEVRLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAETGGK
DEGALFHDDNGKVVLDIGSEEIGQSKAQAAQEALAESLRLLYVALTRGKHRTYVIWGAFK
DAGESSLHYLLHPGQDVVKGQVTLSDEDIRERLAELSAASAGAMEQLDMPGADLLGFRAG
NDEVPALAPLRFTGTIARDWRVASFTSLSSRQHHTAELPDRDETTPVEESPVREVEPAGI
FAFPKGAKAGIFLHKVFEELDFTQAEHFLAPLIEDELDKHGFAAEWSGAVRDMVLNVLQA
PLGEKGINLAQVTTERRLTELEFFFPLAHVTSDGLKDAVTRFMAQHGAAAAFPVDMAELC
GRLSFSPVRGMLLGFIDLVFEQDGRYYIVDWKSNHLGNTPGEYGQAALKREMEASFYPLQ
YLLYTVALDNYLRLRIEDYDYDRHFGGVFYLFLRGIDGTGNGVFADRPPKEFIAELAGVL
LPETVRGAAEALPSPKGRGGAGNKSRKGAVEGQLSLDLY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaagagatttgacctcctgcataccccgcttggcgggcgcaacctgatcgaggcgagt
gccggcaccggcaagaccttcaccatcgccggcgtctacctgcgccttgtgctggaggag
gagctcgacgtgtcgcgcatcctcgtggtgaccttcaccgaggccgccaccaaggagctc
aaggagcgcatccgcaagaagctcaaggacgccgaaaccgccttcgacaccggcaccagc
gacgatttcctcatcgcggggctcgtggagcggaccgccgacaaggccaaggcgcgccgc
ctgctggcgagcgccgtgcgcggcttcgacgaggccgccatcttcaccatccatggcttc
tgccagaggatgctgcaggacaaccccttcgaaagcggctcgctgtgcgataccgaactt
ctgaccgaccaggggaagatcctcaaggagatagcccaggactactggcgcatcaactgc
tacggcgagcccgttgaccggatcgccgcggccgaccatgccaggatcacgcccgagtct
ctgctcaagctcgccaagagggtctgcagcgatccttacgcgcgcgtcatccccgatcct
cccgccggcacggaggaggtcgcagactggctcctggcgctgcggcggaactttttcgac
tacctgcgcgccgagctccccaaaagaaagcggctcaagaacgtgcgcggcttcgacgat
ctcctgggcgacctgcacaccgccctgacccgccccggctcttcgctggcgcggcttatc
agggagcgcttccaggcggccctcatcgacgagttccaggacaccgacccggtccagttc
gccatcttcgacgccgtctacccggtggggcacgaggcccccttcttcctgatcggcgac
ccgaagcaggcgatctacagcttccgcggcgccgacatcttcgcctacctcggggcggcc
gaggcgaccgagcagcgccacaccctcctgcagaacttccgttccgagccggggctgatc
agggccgtgaacaagctcttcacctcgcgggaactccccttcctgcacgaaaagatcggc
ttcaacgaggtggaggcggctcccaaggagcggagcatccttaccgagggtggtgaacgg
aaggcaccgctcacgttctgggtcgcgccgcgcaaggaagcgggcaagccgatcaacaag
ggggaggcgtgggagctcctcccggaaaccgtggcctccgagatcgcccgcatcctgcgc
gacggcgcggcgggaaagctcaccatcgaggagctccggcaggatggggaggaggagcgc
tgggtgccgcggccggtccggccgcgcgacgtggcggtactggtgcgggccaaccggcag
gcgaggctgatgcagcaggcgcttagccgcaggggtatcccgagcgtcctttgcagtgcg
ggaaacctgttcgaatcggatgaggcggcggaactcctgcggctcctctcggcggtagcc
cagcccgggcacgaggcgctcttacgcggggcgctcgcaacagaactggtaggcgttacc
ggatcggaactggcgcaactgatcgacgacgaggagaagtgggaggaggtcctggaggaa
ttccgggagtaccacgacacctggaactcctcttcctgcatggccatggccctgcagttc
ctggagcggcgcaaggtgcggcagcggctcctggccgggccgatgggggagcggcgcatc
accaacgtcctgcacgccatcgagaccatccaccaggcccaggtgaaggagcgtctgggg
atggaaggggtggtcgcctggctctcctgccgcgtcaccgaggagcccaagaaggaggag
tacgaagtccgcctggagaccgacgaggcggcggtccaactggtgaccatccacaagagc
aaggggctcgagtaccccatcgtcttcctccccttctgctgggccgagactggcggcaag
gacgaaggggcgctcttccatgacgacaacggcaaggtggtgctcgacatcggctccgag
gagatcggacagagcaaggcgcaagccgcgcaggaggcgcttgccgagagcctgcggctc
ctctacgtcgcgctcacccggggcaagcaccgcacctacgtcatctggggcgccttcaag
gacgcaggcgagagctcgctgcactacctgctgcaccccggccaggacgtggtgaagggg
caggtgacgctctccgacgaggatatcagggagcgcctggccgagttgtccgccgcttcc
gccggggccatggaacagctggatatgccgggagccgacctccttggcttccgcgccggc
aacgacgaggtgcccgcactggcaccgcttcgctttaccggcaccatcgcccgtgactgg
cgcgtggcgagcttcacctccctttccagccgccagcatcacaccgccgaactccccgac
cgcgacgaaacgacgccggtcgaggaaagcccggtgcgcgaggtcgaaccggccggcatc
ttcgccttccccaagggggccaaggccggcatcttcctgcacaaggtattcgaggagctc
gacttcacgcaggccgaacactttctggcaccgctgatcgaggacgagttggacaagcat
ggcttcgccgccgaatggagtggcgccgtgcgcgacatggtgctgaacgtgctgcaggcg
ccgctaggagaaaaggggatcaaccttgcacaggtgaccacagagcggcgtttgaccgag
ctggaattcttcttcccgctggcccacgtcacctccgatgggctcaaggacgccgtcacg
cgcttcatggcccagcatggcgccgcggccgcgttcccggtggacatggcggaactgtgc
ggccgtctctctttctcgccggtacgggggatgctgctcggcttcatcgacctggtattc
gagcaggacgggcggtactacatcgtggattggaagtccaaccatctcggcaacaccccc
ggagagtacggccaggcggccctgaaaagggagatggaagccagcttctacccgctgcag
tacctcctctacaccgtggcgctcgacaactacctgaggctgcgcatcgaggattacgat
tacgaccgtcatttcggcggtgtattttacctcttcctgcgcggcatcgacggcaccggc
aacggcgtcttcgccgaccgcccccccaaggagttcatagccgagctcgccggtgtgctg
ctgccggaaaccgtgcggggggctgctgaggcgctcccctctcccaaggggcggggggga
gccggcaacaagtccaggaagggtgcggtcgaggggcagttgagcctggatctgtactga
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