Geomonas subterranea: KP001_15285
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Entry
KP001_15285 CDS
T07936
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gsub
Geomonas subterranea
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gsub03016
]
KP001_15285
Enzymes [BR:
gsub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KP001_15285
Transfer RNA biogenesis [BR:
gsub03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KP001_15285
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QXE89783
LinkDB
All DBs
Position
complement(3509649..3510782)
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AA seq
377 aa
AA seq
DB search
MQNKNKATNPAAAHLVTDQKALDELVARLSKESVLAFDLEADSLHHYTEKVCLIQVSSPS
ETRLIDPLAPVDVRALAPIFANPAIKKIFHGADYDMRSLHRDFGIEVVNLFDTMIASQFL
GESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLEYAMKDTSLLIELYRQLEAELV
AKGRLAWVEEESELVAGVRSPSREGELMCLRFKGANKMKPRELAVLEELLKFRDEKARIA
DVPPFRILSNDLLRELAEKQPRSNFELVGIHTMSSKLIERLGRGLLQAIANGLALPQDKL
PQVQPNRRPVLDRLQDEKVKRLKIWREAKSAQLGLGVGLVANNTLLEALAEPGSSQNALL
KRWQREAFGDELASLVS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaacaagaataaagcaacaaatcccgcagcggcacatctcgtcaccgaccaaaaa
gccctggatgaactcgtagcgcggctctcgaaggagtcggtgcttgccttcgacctggag
gccgactcgctgcaccactataccgagaaggtctgcctgatccaggtatcctccccgtcg
gagacccgcctgatcgatccgctggccccggtcgacgtgcgggcgctggcgccgatcttc
gccaacccggccatcaagaagatctttcacggcgcggactacgacatgcgttcgctgcac
cgcgacttcggcatcgaggtggtcaacctcttcgacaccatgatcgccagccagttcctg
ggcgagagcgagttcggcctggccgcgcttttgaagaagcgcttcggggttgagctggac
aagcgctaccagaaggcggattggagcaagcgtcctttctcccaggagatgctggagtac
gccatgaaggacacctccctcttgatcgagctgtaccgtcagctcgaggcggagctggtc
gccaagggacgtctggcctgggttgaggaggagtccgaactggtggcgggggtgagatcg
ccgtcgcgcgagggcgagctcatgtgcctgcgcttcaagggggccaacaagatgaagccg
cgcgagctggccgtcctcgaggaactgctcaagttccgtgacgagaaggcgcgcatcgcg
gacgttcccccgttcaggatcctcagtaacgacctgttgcgcgaactcgccgagaagcag
cccaggagcaacttcgaactggtcggcattcacaccatgtcgtccaagctgatcgagagg
ctcgggcgcgggctgctgcaggcgatcgccaatggcctggccctgccgcaggacaagctg
ccgcaggtgcagccaaaccgccgtccggttctggaccggctccaggacgagaaggtgaag
cggctgaagatctggcgcgaggcgaagtctgcccagcttggcctgggcgtggggctggtg
gcgaacaacacgctcctggaggcgctcgccgagccgggttcctcgcagaacgccctcttg
aagcgctggcagcgcgaggcgttcggtgatgagctggcgtcgttggtgtcctga
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