Geomonas subterranea: KP001_18275
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Entry
KP001_18275 CDS
T07936
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
gsub
Geomonas subterranea
Pathway
gsub02020
Two-component system
gsub02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KP001_18275
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KP001_18275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsub03021
]
KP001_18275
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
gsub02035
]
KP001_18275
Transcription machinery [BR:
gsub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KP001_18275
Bacterial motility proteins [BR:
gsub02035
]
Flagellar system
Flagellar assembly proteins
Stator
KP001_18275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
DUF7096
HrpB7
HJURP_C
Motif
Other DBs
NCBI-ProteinID:
QXE90334
UniProt:
A0ABX8LFU2
LinkDB
All DBs
Position
4167705..4168457
Genome browser
AA seq
250 aa
AA seq
DB search
MNCLLKAYEHEAQRGVPMSRDELVVTHLPLVKFIVDRIASSLPPHLDRDDLRSAAVIGLI
SAAERFDPSRGVQFKTFAEQRIRGTIMDELRAQDWLTRSLRDKFKKLEKEFSQLEQRLGR
NPSSDEVATAMGLELKDYFRLLEEIHLLSFVSLDDAWHDEDGAPFGLLDVLEDKGTESPQ
SQLIARQTVERLAEAIDSLPEKERIVITLYYYEELNLKEIGAVLDLTESRISQLHSQAIV
RLRGKMKRVA
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtcttcttaaggcgtatgagcatgaggcgcaacgcggggtcccgatgagcagg
gatgaactggtggtcacccacctcccgctggttaagttcattgtcgaccggatcgcctcg
tcactccccccgcacctcgaccgggacgacctgagaagcgccgcggtgatcggcctgatc
tccgccgccgagcgcttcgatcccagccgcggggtacagttcaagaccttcgcggagcag
cgcatccggggcaccatcatggatgagctgagggcccaggactggctcaccaggagtctc
cgggacaagttcaagaagctggagaaggagttctcccagctcgagcagcgcctggggcgc
aacccctccagcgacgaggtggccaccgccatggggctcgagctgaaggactacttcagg
ctcctggaggagatccatctcctctccttcgtctcacttgacgacgcctggcacgacgag
gacggcgcccccttcggccttctcgacgtcctggaggacaaggggaccgagagcccgcag
agccagctcatcgcgcgccagaccgtggagcggctcgccgaggcgatcgactccctcccc
gagaaggagcgcatcgtcatcacgctctactactacgaggaactgaacctgaaggagatc
ggcgccgtgctcgatctcaccgagtcgcgcatctcgcagctgcacagccaggccatcgtc
aggctgcgcggcaagatgaagcgcgtggcctag
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