Geomonas subterranea: KP001_20960
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Entry
KP001_20960 CDS
T07936
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gsub
Geomonas subterranea
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gsub03016
]
KP001_20960
Enzymes [BR:
gsub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KP001_20960
Transfer RNA biogenesis [BR:
gsub03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KP001_20960
Prokaryotic type
tRNA splicing ligases
KP001_20960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QXE90824
UniProt:
A0ABX8LJJ9
LinkDB
All DBs
Position
complement(4781633..4783093)
Genome browser
AA seq
486 aa
AA seq
DB search
MNVPAALKRISDTIWELPVSYKEGMLVPARIVASEKLVKEMDAGVFEQVSNVATLPGIQR
YAYCMPDGHWGYGFPIGGVAAMDPRSGVISPGGIGFDINCGMRLVLTSLTAEQVQPKLHQ
LVDRLFARIPTGVGCHGFIKMKGDDFRSVVQQGSRWCLKNGFANQQDLEMTEEGGCFPGA
DATHISDKAVERGYNQLGTLGSGNHYCEIQVVQPQNIMDPELAGSFGLTTVPNQVVIMFH
CGSRGFGHQVATDYLKLFLSVMERKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAF
ANRQVILHRIREVFSDVFHASPDDLGLRMVYDVAHNTAKLEKHLVNGSSKELLVHRKGST
RAFGPGLPGLPECYQKTGQPVIIGGSMETGSYLLAGMATGADAWYTTAHGSGRTMSRHEA
KKKFRGDKLQREMEQRGIYVRTDSFGGLAEEAGAAYKNIDEVVEATELAGLSKRVARLVP
IGNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtaccagctgccctgaagcggatcagcgacacgatatgggaactgccggtaagc
tacaaggaagggatgctggttcccgccagaatcgtcgccagcgagaagctcgtcaaagaa
atggacgccggcgttttcgagcaggtgagcaacgtcgccacgcttcccggtatccagcgc
tacgcctactgcatgccggacggccactggggatacgggttccccatcgggggggtagcc
gccatggatccccgttccggcgttatctccccggggggcatcggcttcgacatcaactgc
gggatgcggctcgtgctcaccagcctgaccgccgagcaggtccagcccaaactgcaccag
ctcgtcgaccggcttttcgcccgcatccccaccggcgtcgggtgccacggctttatcaag
atgaagggggacgatttccgttccgtggtgcagcagggctcgcgctggtgcctcaaaaac
ggcttcgccaaccagcaagacctggagatgaccgaggaaggagggtgctttccgggggcg
gacgccacacatatcagcgacaaggcggtggaacgcgggtacaaccagttgggcacgctc
gggagcggcaaccattactgcgagatccaggtggtgcagccgcaaaacatcatggacccg
gaactcgccggctcattcggcctcaccacggttcccaaccaggtggtgatcatgttccac
tgcggcagcagggggttcggccaccaggtggccacggactacctgaagctcttcctctcg
gtcatggaacgcaagtacggcatcaagatcgtggaccgcgagctcgcctgcgcccccttc
cattcccccgaggggcaggcctatttcagcgccatgaagtgcgccgtcaacatggctttt
gccaaccgccaggtcatcctgcaccggatccgcgaggtattctccgacgtgttccacgcc
tcgccggacgatctcggcctgcgcatggtgtacgacgtggcccacaataccgccaagctc
gaaaagcaccttgtcaacggcagcagcaaggaactgctggtccaccgcaaaggttcgacc
cgcgccttcggcccggggctcccgggacttccggagtgttaccaaaagacgggacagccc
gtgatcatcggtgggagcatggagaccggctcctacctgctggccggcatggcgaccggc
gccgatgcctggtacaccacggcgcacggcagcggcaggaccatgagccgccacgaggcg
aaaaagaaattccggggcgacaagctgcagcgcgagatggagcagcgcgggatctacgtg
cgcaccgactctttcggcgggctggcagaggaggcgggtgccgcctacaagaacatcgac
gaggtggtggaggcgaccgagctggccgggttgagcaagcgggtggcgcgtctggtgccg
atcgggaacatcaaggggtga
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