Gardnerella swidsinskii: K9E37_00010
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Entry
K9E37_00010 CDS
T08402
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9E37_00010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsw03400
]
K9E37_00010 (mfd)
Enzymes [BR:
gsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9E37_00010 (mfd)
DNA repair and recombination proteins [BR:
gsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K9E37_00010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
AroM
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
UQA88597
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All DBs
Position
590..4198
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AA seq
1202 aa
AA seq
DB search
MAADSRSNIKNNKNDKTDDISVISLRDILNDLSTKDSLFKALSEYDLDVISDYCCESANK
NRKDLDSISEDLTISSPIGIRSAIVAALAKKKPVVVIVPSSRDAEDFIASVRDWYDGDAQ
DVAKLEAWETLPHERLSPRADTVASRIAVFRRLCHPENNTSLFGPIRVLVMPVRSLIQPI
VEGIGDIDPLLFECGKELTLEYAVKRLVENAYTRVDLVMERGEFAVRGGIIDVFAPTMTH
PVRIEFFGDEIDTIKQFHASDQRTYGNNIASIWATPCRELQITEKICKRARSLIGAIPNA
DDMLESIANSIPVEGMESLLPALVDRMESVQNMLPKESVIILSDPEKCRRAADDVTATAN
EFLAASWHVAASGHGSGAPITFDQANFLDFDETISSLELSNHDVWKLTSFGVDNQIYGNI
ALPASAPQEFRGDESKVSGGITSLVDNGFAVTITAAASGTLARLRRAIYATGVHEFTTVR
SSISDGFIDNAARIAILTERDLTGKSSASAQLKTPRRRRKAIDLMELKPGDFVVHEQHGI
GRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPNDKLFIPTDQLDLVSKYIGAEIPKL
NKLGGSDWAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKELEDAFPYQET
ADQLTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLV
QQHYETFINRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKD
LGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPED
RLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELVPDVRVAIAH
GKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGR
VGRGHERAYAYFLYDPSKSMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGNLLGDE
QSGHIEGVGFDLYVRMVSEAVEKYKEPERVEPVCVTIDLPVEASLPVDYIASDKLRLEAY
RKLAAAKDNSDLQELHDELLDRFGNPPEEFESLCDVARLRFKAREIGITQISSQGKSVRV
VGIDPKESVMMRLKRIYRGLQYRPLTHMLIVPAPFESSLGSGSMSESDILKWSKQLLEDL
AW
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgatagcaggtctaatatcaaaaataacaagaatgataagactgatgatatt
tcagtaataagcttgagagatattcttaatgatttatcaactaaggactcactttttaaa
gctttatctgaatatgatcttgatgtgatatctgattattgttgcgaaagtgcaaataaa
aatcgtaaagatttagattcaataagtgaagatttaacaatttcttctcctattggaatt
cgttctgctattgttgctgcattagctaagaaaaagccagttgttgttattgttccatcg
agtagagatgctgaagattttattgcgtctgtgcgtgattggtacgatggtgatgctcaa
gacgttgctaaattagaagcgtgggaaacgttacctcatgaaaggctttcgcctagggca
gatactgttgctagcaggattgcagtgttccgtaggctttgccatcctgaaaataacaca
tcactttttggtccgattcgcgtgttggttatgcctgtgcgatcgcttattcagcctata
gttgaaggcattggtgatatagatcctctgttatttgagtgcggaaaagaattaactctt
gaatatgctgtgaaacgtttggtagaaaacgcatatactcgtgttgatttggttatggaa
cgtggagagtttgctgttcgtggtggaattattgacgtttttgcgccaacgatgacgcat
cctgtgagaattgaattttttggtgatgaaattgatactataaagcaatttcatgcttct
gatcagcgtacttatggcaataatattgcaagtatttgggctacgccttgccgtgagctt
cagattacagaaaaaatttgcaagcgtgcgcgttctcttattggtgcaattccaaatgct
gacgatatgcttgaatcaatcgcaaattctatacctgtagaaggtatggagtctttgttg
ccagcactagtggatcgcatggaatcagtgcaaaatatgcttccgaaggaatctgttatt
attctatctgatcccgaaaaatgccgtagagctgcagatgacgtaactgctacagctaac
gaattcttagcagctagttggcatgttgctgcttctggacacggttctggagctccaata
acattcgatcaagctaatttcttggattttgatgaaacgatttcatcgttagaattgtct
aatcatgacgtatggaaattaacatcttttggtgttgacaatcaaatttatggaaatatt
gctttgccagcatcggcgccacaagagtttcgaggagatgaatcgaaagtttctggcggc
atcacttctcttgttgacaatggttttgctgtaactattactgcagcggcttctggtact
cttgcacgcttgaggcgcgctatatatgcgactggtgtacatgaatttactacagtgcgc
tcaagtatttcggatggcttcattgacaatgctgcgcgtattgcgattcttacagagcgt
gatctgacaggtaaatcttctgcatcagctcaactaaaaactccaagacgcaggcgcaaa
gcaatcgacctaatggaactaaagcctggtgatttcgttgtgcacgagcagcatggtatt
ggacgttttgtcggcatgaagcaacgtaatattgctgtttcgggtggtagtgcaacgcgc
gaatatttagtcattgaatatgctcctagcaaacgtaacgctcctaacgataagcttttt
attccaactgatcagcttgatttagtgagtaaatatataggtgcagaaataccaaagctt
aacaagctcggaggttctgactgggctcaaactaaagcaaaagctaaaaagcatgttcat
gaaattgctgaaaatcttattaaactttattcagcaaggcagcaatctcgcggatttgcg
tttagtaaagatactccttggcaaaaagagttggaagacgcatttccttatcaagaaact
gctgatcagcttacaactattgacgaagtaaaagcagatatggaaaacccaatcccaatg
gatcgcttaatttgtggagatgttggttttggtaaaactgaaattgcgttacgtgcagct
tttaaagctgtgcaggattccaagcaagttgttgttttagttccaacgaccttgcttgtt
caacagcattacgagacttttataaatcgttttgaaggattccctgtaaaagttgctgca
atgagtagattccaaacttctaaagagattgaagaaactttagctggattgcaagatgga
agcattgacgttgttattggaacgcataagcttttgaatcctagtataaagttcaaagat
ttaggtttggttattattgacgaagagcagcgttttggtgtggaacataaggaaacgctt
aaagctttgcgcacaaacgttgacgtattaagtctttcagcaacgccaattcctagaact
cttgaaatggctgtaactggtattcgtgaaatgtctactcttgcaactcctccagaagat
aggcttccagtgcttacatacgttggtgcgtatgataattctcaagttgctgcgtgcatt
aagcgtgaattgttgcgtgggggtcaagttttttacgtccataatcgcgttgaagatatt
agttctgttgcaagtaagattcaggagcttgtgccagatgtccgtgttgctattgctcat
ggaaaaatgggcgagaagcagctcgatgctgttattcgtgatttttggcatagagatatt
gatgtgcttgtttgtacgacgattattgaaacaggtcttgatatttctaatgcgaataca
cttattgtcgatcacgcagatagattcggtttaagccagttgcatcagcttcgtggtcga
gtaggtagaggtcatgagcgtgcttacgcttactttttgtatgatccgtctaagtctatg
acacaacaatctcacgataggctctcaacaattgctcagcatactgcgcttggttctggt
tttgatgttgcgatgaaagatttggaattgcgcggaactggaaatttgcttggagatgag
caaagtggacacattgagggtgttggatttgatttgtatgttcgtatggtttctgaagct
gttgaaaaatataaggaacctgaaagagttgagcctgtttgcgtaactattgatcttccc
gttgaagcttctcttccagttgattatattgcttctgacaagcttcgtttggaagcgtac
aggaagcttgctgctgctaaggataatagtgatttgcaagaacttcacgatgagcttctt
gatcgctttggtaatccgcctgaagagtttgagtctttgtgtgatgttgctcgtttgcgt
tttaaagcacgcgagattggtattacgcaaatcagctctcaaggaaaatcagtacgagtt
gttggcatcgatccaaaagagtctgtgatgatgcgtttgaagcgtatttatagaggattg
cagtatcgtcctcttactcatatgcttattgttccagctccttttgaatcttcactcggg
tctggttcaatgagtgaatcagatattcttaagtggtctaagcaattacttgaagactta
gcgtggtga
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