Gardnerella swidsinskii: K9E37_02190
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Entry
K9E37_02190 CDS
T08402
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03420
Nucleotide excision repair
gsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9E37_02190
03430 Mismatch repair
K9E37_02190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsw03400
]
K9E37_02190
Enzymes [BR:
gsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9E37_02190
DNA repair and recombination proteins [BR:
gsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K9E37_02190
MMR (mismatch excision repair)
Other MMR factors
K9E37_02190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
ResIII
Microtub_bd
DEAD
DUF2325
Motif
Other DBs
NCBI-ProteinID:
UQA88980
LinkDB
All DBs
Position
complement(548730..552923)
Genome browser
AA seq
1397 aa
AA seq
DB search
MIDKTNKQFTRKNTDSAEQAAAIQAPTNKNMIIVAGAGSGKTYTMTRRVIDLIERGVAPE
SILGLTFTNKAASELLARVAQAVSQHSSEINKLINNGNSASSSGFLKPEVMTYDAFFQSI
VRQYGLLVGFDQNTQPLSDAGARELIKPLVNDYVTNHAEVLSWYSFDALIDDVLALAADI
SCSMIGINSRGESIDSTSKAVLEIQKWNNAWIEHLQKAINCAETTEIIAKKPSSIKLRRG
KNDSDEKYFEKCENYGKEYVEYLNITLKNKCYESCNNLLEAAEKRNVLLELVLAFDAAKQ
RANMAQFSDFTIAAYRLVTHFPSIAEQYRRQYSQVLLDEYQDTSTTQAMLIATLFHKKTN
GVEEASVAAKTSENQDFLTTQQTHIAAVGDPFQAIYSFRGASSGAFRKLEQALNIDQSSE
FSLTRTRRNSQLILKAANSITKPLRVPALRHSSSLATEVEVKNLQYLDNAPKGTFSVLNM
PTQYQEVEAVVRFVKYVKHNALSENDDTNSASARVAVLFRSKNNISLYEEALQKAGLRTL
TVGYSALLEKPEIRDVLALLSVVADHTNTQALMRLLATPRFALNTDDLAAIANIATSKNI
EYVFRALVQAGLVDAETPRSKWSQVVREQQSQASQTNSIHGGVFVADVLLEAYETQLSEE
AKNNDKNDNNLLSELKNNLSSKAYVAVLRIGQMIHAIQRAQSGSLQDIMRVAVETLNVDI
DVALSRALMNDTSSNATLLDDMHSTVDSICLLADAYLQEMSDFTTPTLHGFMSWIFNIDK
INDQPSSVDEAADVVLMTIHQSKGLEWPAVAIVGLNEGAFPSNQGDNLRVIATQQSGVYR
ERAYATLEVASKVPVSMRVDANILPRFPHDVDLETSMEPQKSLKNMLTVDDIDAEVYGSR
AREMFDLAEKFHEHEQAPVEAIPSEASKVYDAVMKTGTLPLSQVEERGRALHIDERHLMY
VALTRAKFAALLTCSQSNAMSVVENKENFANSAASSVDESSNISTSRVKKPSVFWQEMYD
SMRGSEESPVQVTAKVSDSSNQVGYVVGESASQLAQLFSEESTIPTEDNEKQLSWPSASS
EAIRSVLQKSAQDVVNSKMSNQISGISKDNSLLYKAQALLQDADLMPKIDWYHNIQELKN
RAEQLSNVENVNVTAVQRRAMFRNDYSRANEDFNDADAKRLRKEWMAIIRPIPSVSSPAS
DLGTRFHAWAEQFVKAGCVNKNSIQYDVDETAVENVAETCENISQNAKSSERKLLIWKQR
LITSKWAHRRPIAAEQPIVAHVPELGDQIINGKIDAIFAGGLNPEDPSKLYTIVDWKTGR
KPTKPQDIALKLGQLDWYRLLLSLMTKVPLDAIDATLYYVNISDECEREIHAEQKTKDEI
LAELHSDTLISLDDDDA
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgattgataaaacaaataagcaatttactcgcaagaacaccgatagcgcggagcaagct
gcagcaattcaagcaccaacaaataagaacatgattattgttgcaggagctggaagcggc
aaaacgtatacgatgactcgtcgagttatcgaccttattgagcgcggagttgctcctgaa
agtattttgggtttgacttttactaataaagcagcttctgagctgcttgcaagagttgct
caagctgtaagtcagcatagtagcgaaataaataagcttatcaataacggaaattccgca
tcttcaagtggctttttgaagccagaagtaatgacatacgatgcttttttccagtcaatt
gtgcgccaatatggtttgcttgttggatttgatcaaaatacgcaacctttaagcgatgca
ggtgcgcgcgaattaataaaaccgctagtaaacgattatgttactaatcatgcggaagtg
ctgtcttggtatagttttgatgcgcttattgacgacgtgcttgcgctcgcagcagatatt
tcatgctcgatgattggcataaatagcaggggagagtctatagatagtacgtctaaagct
gttttagaaattcagaagtggaataacgcttggattgagcatttgcaaaaagcaattaat
tgtgctgaaactactgaaataattgcaaaaaagcctagctctattaaattgcgtcgcgga
aaaaacgattcagatgaaaaatatttcgaaaagtgcgaaaattacggaaaagaatacgta
gaatacctgaatattacattaaaaaataagtgttatgaatcttgtaataacttgcttgaa
gctgctgagaagcgcaatgtattacttgaattagttttggcttttgacgcagcaaagcag
cgcgcaaatatggcgcaatttagcgattttactattgctgcataccgtttggtgacgcat
tttccttctattgcagagcagtatcgccgccaatacagccaagttttgcttgatgaatat
caagatacttctacaactcaagcaatgctgattgcaacgctgtttcataaaaaaactaac
ggtgtggaagaagctagcgttgctgcgaaaactagcgaaaatcaagactttttaactact
caacaaacgcatattgctgcagtaggtgatcccttccaagctatttactcgtttagagga
gctagttccggagctttcagaaagcttgagcaagcactaaatatcgaccagtcaagtgag
ttttctcttacaagaacgcgacgcaattcgcagcttattttaaaagctgcaaattctatt
acgaaacctttgcgagtgcctgcgcttcgccatagtagttcacttgctacagaagtagaa
gtgaaaaacttgcaatacttagataatgcaccaaaaggtacttttagtgtgttaaatatg
cctacgcaatatcaagaagtagaagccgttgtgcgttttgtaaaatatgtaaaacataat
gcgctgtctgaaaacgacgatactaattctgcatctgctagagttgcagttcttttccgt
agcaaaaataatatttcgttatatgaagaagcattacaaaaagcaggtttgcgcactctt
actgttgggtattctgcattgcttgaaaaaccagaaattcgagatgttttagctcttctt
tctgttgttgcagatcacacaaatactcaagctttgatgagattgcttgcaactcctcgt
tttgcgcttaatactgatgatttggctgctatagctaatattgcaacatcaaagaatatc
gaatatgtttttcgtgctttagtgcaagcaggtttagtagacgctgaaactcctcgctct
aagtggtcacaagttgttcgagaacagcaatctcaagcttcgcaaaccaatagtattcat
ggtggagtttttgtggcggatgttttgcttgaagcatacgaaactcaactaagcgaagaa
gcaaaaaataacgacaaaaacgacaataatttgctttctgagctaaaaaataatttaagc
tctaaagcttatgtagcagtgttaagaatagggcaaatgattcatgcaatacaacgtgct
caatctggctctttgcaagatattatgcgcgttgctgtagaaacgcttaacgttgatatt
gatgttgcgctatctcgtgcgcttatgaatgatacttcctctaatgcaacgcttcttgac
gatatgcactctactgtcgattctatttgtctactagcagacgcgtatttgcaagaaatg
agcgattttacaactcctactttgcatgggtttatgtcttggattttcaatatagacaaa
attaacgatcaaccttcttcagtggatgaggctgcggatgtcgtattgatgactattcac
caatcgaaaggtttggaatggcctgctgtagcgatagttgggcttaatgaaggcgcgttc
ccaagtaatcaaggcgataatttgcgcgtaatagcaacgcaacaaagtggcgtgtacagg
gaaagggcatacgcaacgctcgaagttgcttcaaaagtgcctgtttctatgagagtggat
gcaaacatattgccaagattccctcacgatgttgatcttgaaactagcatggaacctcaa
aaatctttgaaaaatatgttaactgtagacgatatcgacgcagaagtttatggatcaaga
gctagagaaatgtttgatttggcagaaaaattccatgagcatgagcaggctccagtagaa
gcgattccttcagaagctagcaaagtgtatgacgctgtgatgaaaactggcacattgcct
ctttcacaagtcgaagagcgtgggcgcgctttgcatattgacgagcgtcaccttatgtat
gttgctttgacgcgtgctaaattcgcagcattgctcacttgcagccagtctaatgctatg
agcgttgttgagaataaagaaaattttgccaatagtgcagcttcttctgtagatgaatct
tcaaatatttcaacttctagagttaaaaaaccttctgttttttggcaggaaatgtatgat
tcaatgcgcggatctgaagaatctccggttcaggtcacagctaaggtttcagattcttca
aatcaagtaggttatgttgtaggggagtcagcttcgcaacttgcgcaattatttagcgag
gaaagcactattccaactgaagataatgagaaacaattatcttggccgagtgcatctagt
gaagctatacgtagtgtattgcaaaaatctgcgcaagacgttgtaaattcaaaaatgagt
aatcaaatttctggtatttcaaaagataattctttgctttacaaagctcaagctttgcta
caagatgcagatttaatgccgaaaattgattggtatcacaacattcaagagttgaaaaac
agagcagagcagctttctaatgttgaaaatgtcaatgtgactgctgtgcaaagacgcgct
atgtttcgtaatgattattcgcgcgcgaatgaagattttaatgatgcggatgctaagcgt
ttgcggaaggaatggatggcaattattcgccctattcctagcgtttcttcgcctgcttct
gatttgggaacgcgttttcatgcttgggctgaacagtttgtaaaagctggttgcgtgaat
aaaaattctattcagtatgacgttgatgagactgctgttgaaaacgttgctgaaacttgc
gagaatatttcgcaaaatgcaaaatcttcggagcgcaaattgttgatatggaagcagcgt
ttaataacatcaaaatgggcgcatcgccgtcctatagcagcagagcagccgattgtagct
catgttccagaattaggcgatcaaattattaatggcaaaatcgacgcaatatttgcaggt
ggtttaaatccagaagatccaagcaaattgtacacgattgttgattggaaaactggtaga
aaaccgaccaagccgcaagatattgcgcttaaacttggccagcttgactggtatcgtctg
cttttgtctcttatgactaaggttccgcttgatgctatcgatgccaccctttattatgtg
aacatatcggatgaatgtgaacgggaaattcatgccgagcaaaaaacgaaagatgagatc
cttgccgagttacactctgacacgttaatctccctcgatgatgatgacgcataa
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