Gardnerella swidsinskii: K9E37_02255
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Entry
K9E37_02255 CDS
T08402
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K9E37_02255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsw03021
]
K9E37_02255
03400 DNA repair and recombination proteins [BR:
gsw03400
]
K9E37_02255
Enzymes [BR:
gsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K9E37_02255
Transcription machinery [BR:
gsw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K9E37_02255
DNA repair and recombination proteins [BR:
gsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K9E37_02255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Ac81
Motif
Other DBs
NCBI-ProteinID:
UQA88988
LinkDB
All DBs
Position
complement(578664..582683)
Genome browser
AA seq
1339 aa
AA seq
DB search
MLDVNAFDKLRIGLATAEDIRSWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGNLRKRRDNEIEARAKKVEED
LHELEESGESKGAAKSKLRASAEREMSAIRTRYDEQIQRLNAVFDRFKGLRAGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLKSAAEELRAEIDNGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRG
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARTLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVIDGAKGQG
RIFSSLAEAEMALDKHEIDMQAKVLIRVPADFVLPKNWEPAELKVVDPEPGSPDVVREER
FKDGTVLFATSCGRILFNGTLPVDYPFVNEQVPKGVLSKIVDEIATRYSTAQVAATLDAL
KDLGFTRAPWSGVTMAFSDIVLPPNREQIAQDYEDQAAKINSQYDMGLLTDEERRQELIN
LWTECTDKVADAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRG
LMMKIADRDENGNLTLVKAADGGPYSRLLAADVLDPADGTTVLAKCGDALSMDVLRDLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATSRLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDHGRQVTLTPDDTT
VEPIVYPVTRRAPMLVKDGEHVDVGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHNVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQAKFREANLAAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKEDDLKGLKENVIIGKLIPAGTG
LARYRNANVEPDPQVRDSIYPNFGLGGADSTPSNFGESDMGDVDFSNIDFGDMKLGDDFN
PDDFLDDQGGQSDYGDEAE
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggattggactggccaccgccgaagatatc
cgtagctggagccacggcgaagtaaagaagccagaaaccattaattaccgtaccctaaag
ccagagaaggacggtctgttcggtgagcagatcttcggtccaactcgcgattgggagtgc
gcgtgtggtaagtataagcgcgtgcgctttaagggaatcgtgtgcgagcgatgcggcgtg
gaagttacccgcagccgcgttcgccgcgaacgcatgggtcatattgagcttgcagctccg
gtaacgcacatttggttcttcaagggtgtgccaagccgtttgggctacttgctcgacatt
gcacctaaggatcttgaaaaagtaatctacttcgcagcctacatggttacgaaagtcgac
gaagaacagcgtcatcaagatcttccagatttgcaagacgaattcgataccgaaatcggc
aaccttcgcaagcgccgcgataacgaaattgaagcgcgcgcaaagaaagttgaagaagac
ttgcacgagctggaagaatctggcgaaagcaaaggtgctgcaaaatctaagctgcgcgct
agtgcagaacgcgaaatgtctgctattcgcacccgttacgacgagcagattcagcgtttg
aatgccgtgttcgaccgcttcaagggcttgcgtgccggagacatggaaggcgacgttgac
ttgtggcgcgagatggaagatcgctacggtgactacttcgaaggctgcatgggtgctgaa
gctattaagaagcgtttgcaggacttcgatttgaagtctgccgcagaggagcttcgcgca
gaaatcgacaacggaaccggtcagcgcaaggctcgcgctttgaagcgactgaaggttgta
aacgcattcttgactactggaaacaagccagaagctatggttttggacgtaattccagta
atcccaccagatttgcgaccaatggttcagctcgatggtggtcgttttgcaacttccgat
ttgaacgatttgtaccgtcgcgtaatcaaccgtaacaaccgtttgaagcgacttattgag
ctcggcgctcctgaaatcatgcttaataacgaaaagcgcatgcttcaggaagcagtcgat
tcgctcttcgacaacggtcgccgcggacgcccagtaaccggcgcatccaaccgaccatta
aagtcgctttccgacatgcttaagggtaagcaaggtcgattccgtcagaacttgctcggt
aagcgtgttgattactccggccgttccgtaatcgtcgttggtccaagtcttcgcatgcat
cagtgcggtttgccaaagccaatggcattggagctgtttaagccgttcgttattaagcgt
ttggtagatcagggctttgctcagaatatgaagagcgcaaagcgtttggttgaccgcggc
gactccgaagtttggggcgtcttggaggaagttatttccgagcatcctgtgcttcttaac
cgcgcacctacacttcaccgcttgggtattcaagcatttgagccaattttggttgaaggt
aaagcaatccacctgccaccacttgcctgcgcagcattcaacgcagacttcgatggtgac
cagatggcagtgcatcttccgctttctgcagaagctcaagccgaagcacgcactttgatg
atggcttccgacaatatcttgaagccagcagacggtcacaccgttacaatgccttctcag
gatatgattctgggtctttactacttgtctaccgtaattgacggagcaaagggtcagggt
cgtattttctcctcgcttgctgaagctgaaatggctctcgacaagcatgagattgacatg
caagctaaggtgctgattcgagttcctgcagacttcgtattgccaaagaattgggagcct
gctgagcttaaggttgtcgaccctgagccaggcagcccggacgttgtgcgcgaagagcgt
tttaaggacggaactgtactgtttgcaacttcttgcggacgcattttgttcaacggaact
ttgccagtcgactatccgttcgtaaacgagcaggtgccaaagggcgtactttctaagatc
gtcgacgaaattgcaacccgctattctacagctcaagttgcagcaacactcgacgctttg
aaggatctcggctttactcgcgctccttggtctggcgtaacgatggcattctccgacatt
gtgcttcctccaaatcgcgaacaaatcgcgcaagattacgaggatcaggctgcaaaaatc
aactcccagtacgatatgggtcttcttaccgacgaagaacgtcgtcaagagttgattaac
ttgtggactgaatgcaccgacaaggttgcagacgcaatgcgcgaaaacttccacgacgac
aacaacgtgaacatcatggttcagtcaggcgcacgtggtaactggatgcagattcgccag
attgctggtatgcgaggcctcgtggcaaaccctaagggcgagattattcctcgacctgtt
aagtcaaactaccgcgacggcttgtctgtgttggagtacttcatctcccagcacggcgct
cgtaagggcctggcagataccgcacttcgtacggcagaatctggctacttgactcgtcgt
cttgtggacgtttcgcaggaagtaatcgttcgcgaagaagattgtggcactaagcgcggt
cttatgatgaagattgctgatcgcgacgaaaacggcaatttgacgcttgttaaggctgct
gatggcggtccatactcgcgcttgcttgctgcagacgtgctcgatcctgctgacggcact
acagttttggcaaagtgcggagatgcgctttctatggacgttttgcgcgatttggttgcg
cacggcgttgaggaagttaaggcgcgttctgtgcttacttgcgaatctaagcgcggcgtt
tgcgcaaagtgctacggatggtccttggctacgagccgactcgtggatgttggcgaggct
gttggtattgttgcagcacagtccattggtgagcctggtacgcagcttacgcttcgttcc
ttccactctggtggcgtcgcttcggcttctgatattactcagggtcttcctcgtgttacg
gagcttttcgaggctcgtactcctaagggtgaggctccaatcgctgagttcccaggcgtt
gtgaaggttgaggatactgaccatggtcgtcaggtgactttgactccagacgacactacg
gttgagccaatcgtttaccctgtgacgcgtcgtgcgccaatgctggtaaaggatggcgag
catgttgacgttggtacgcagctgattgagggttctgtggatcctaagaagattttgcga
atccttggtccgcgcgcagctcaggtgaatattgtggaagaagttcacaacgtttaccgt
tctcagggcgttgatattcacgacaagcacattgaagttattgtgcaccagatgcttcgc
cgtattacggtgatcgattctggcgatacggatcttcttccaggtgagcttgtggatcag
gcaaagttccgtgaggcaaacttggctgccgttaagaacggtggcaagcctgctgctggt
cgaccagagcttatgggtattaccaaggcttctttggctacggattcttggctttctgca
gcatcgttccaggagactacgcgcgtgcttactgaggccgccttaagccagaaggaagat
gaccttaagggcttgaaggagaatgtgattatcggtaagctcatcccagctggtaccggt
ttggcgcgttaccgcaacgctaacgtggagccggatcctcaagttcgcgactctatttat
ccaaacttcggtttgggcggtgcggatagcacgccttcgaacttcggtgagagcgatatg
ggtgatgttgacttctccaacattgattttggcgatatgaagctcggcgacgactttaat
ccagatgacttccttgacgatcagggtggtcagagcgattatggcgacgaagctgagtga
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