Gardnerella swidsinskii: K9E37_02530
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Entry
K9E37_02530 CDS
T08402
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9E37_02530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsw03019
]
K9E37_02530
03009 Ribosome biogenesis [BR:
gsw03009
]
K9E37_02530
Enzymes [BR:
gsw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K9E37_02530
Messenger RNA biogenesis [BR:
gsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K9E37_02530
Ribosome biogenesis [BR:
gsw03009
]
Prokaryotic type
rRNA processing factors
K9E37_02530
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UQA89034
LinkDB
All DBs
Position
complement(668510..671803)
Genome browser
AA seq
1097 aa
AA seq
DB search
MPRIIRERFNEFEAENSRTVSKTATSAEMSGIMQSTDFAKSNIAAGDTLQQSSGVTRRRR
GRRVTRGAGAAGEAMELKVEDSSTKDSEPHVVKSRPITSLLFQEPVLPKVVNNRSEESSS
SRNDLRDNSRDGLNDDLRDDLRDISRGRRGGRNSRDSRDSRDSSERKSRSERRENSSEIK
RDSGRGNSRETSRETSHSMYSQDSEYAKNFQDSQDDRDEKTRKSQRSRRSRRLNAVERRA
AAEVEQIEEDLAYDNIVYAPIDTRIDETLDVSDILSAENTSNRRSNRRNMSNNISNDDDA
RNENGAVDSRGGSNSRDNRDSRNSSDEGDNRGTNDDYNANNGNDDDEIMITRRRRRRRSS
RTDRNESRNGSRDLDIDISNDLDDDVNSRTKRTSLDEVSQEDRDLIPDPEELREQDEEET
LYTRRRRRRRSKSSDDANSASSQEESSDYTNANEDDLTSRRSRKQQYIDEITDIEGSTRL
EAKRQRRRDNRRERSRQNLLMEQDFLARRENVERLMVVRERDRHTQISVIEDNILVEHYV
SDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEVNWDMARLEGQPRRIEL
AFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLRA
IVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERIEAKREEYLHGKRPKLLQGEP
DVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEHEGKDVFDK
WQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEAS
EEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAEVTSLGLVQM
TRKRVGQGLVEAFSEECPTCKGRGFILHDEPTVSSEYADPYALKGGDPFVKTNKYGHGSA
TEQPAPVKQQGSSAEVRAKLARIAAASVITDAAHKSEEETQYSNFLNSDKESISSKADET
GETADAGETAETSEVAETSEADKTSEELVENNLEDTTQEIAEYTAEQPTQEPAQDTTQEP
MQDATQETTQETTESDD
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagaataataagagaacgcttcaatgaatttgaagctgaaaatagtagaactgtg
tctaaaaccgctacttctgcggaaatgtccggaataatgcaatctacagattttgcgaaa
agtaatatagctgccggcgatactttgcagcaaagctctggcgttacgcgtcgccgtcgc
ggtcgacgagttactcgtggtgccggtgcggctggagaagcaatggaactaaaagttgag
gattctagtacgaaggattctgagccgcatgttgttaaatcgcgcccgataacttcgctc
ctattccaggagccagttcttcctaaggtagtgaacaatcgtagtgaagaaagcagcagt
tctcgtaatgacttgcgtgacaactcgcgtgatggcttgaatgatgatttgcgcgatgat
ttacgtgatatttctcgcggaaggcgcggtggacgcaatagccgtgattctcgtgatagt
cgtgatagtagcgaacgcaagtctcgttctgaaagacgcgagaattcaagcgaaataaag
cgtgatagtggcagagggaatagtcgtgaaacatcgcgtgaaacaagtcattctatgtat
tctcaagattctgagtacgctaagaattttcaggattcgcaagatgatcgcgatgaaaaa
actcgcaaaagccagcgttctcgccgttctcgcagattgaatgctgttgagcgacgtgct
gcagctgaagttgagcaaattgaagaggatcttgcatacgacaatattgtttatgctccc
attgatacgcgcatcgatgaaactcttgatgttagcgatattttatctgcagaaaatact
tcgaataggcgttctaatcgtcgcaatatgtcgaataacatctctaatgatgatgacgct
cgaaatgaaaacggtgcagtagacagcagaggcggtagcaatagcagagataacagagat
agccgtaatagcagtgacgaaggcgataacagaggtacaaacgacgattataatgcgaat
aatggcaacgatgacgatgaaataatgattacgcgtcgccgtcgtcgccgtcgtagctct
cgcactgatcgaaatgaaagccgcaacggaagtcgcgatttagacattgatatttcaaat
gatcttgacgatgacgtgaattctcgcacaaaacgcacaagtctagatgaagtctctcaa
gaagatcgcgatttaattccagatccagaagaacttcgtgagcaagatgaggaagaaact
ctttatacgcgtcgccgtcgtcgccgccgttctaaatcctctgatgacgcaaattctgcg
tcttctcaggaagagtcatccgactacactaatgcgaacgaagacgacttgacttctcgc
cgctcgcgcaagcagcagtatatagacgaaattacggatattgaaggctctacgcgactt
gaagcaaagcgccaacgccgtagagataataggcgtgagcgtagccgtcaaaaccttctt
atggagcaagatttccttgctcgtcgcgaaaatgttgaacgattaatggttgttcgtgag
cgcgatcgccacacgcaaatttccgttattgaagacaatattcttgtagaacattacgtt
tctgatattcaagaagttgctactgttggaaatatttatcttgggcgcattcaaaacgta
cttccaagcatggaagctgcattcgtagatattggtcaggccaggaatggcgtgctttat
gcaggcgaagttaattgggatatggctcgtcttgaaggtcaacctcgtagaattgagctt
gcgtttaagtctggcgatcctgtgcttgtacaggttactaaggatccaattggacataag
ggtgctcgattgacttcgcaagtaactcttgcagggcgtttcttagtgcttgtgccatct
ggcggtatgacaggtgtaagccgcaagctttcagatcgagagcgctcgcgtttgcgcgct
attgtgtcgaagattgcaccaaaagatatgggcgttattattcgtactgctgctgacggt
gcaagcgaggagtcgattgaaaaagatttagattcgctcgttaagcagtgggagcgcatt
gaagctaagcgcgaagaatacttgcatggaaagcgtcctaagctgttacagggtgagcct
gatgtggcaattcgtgttgtgcgcgatattttcaacgatgacttccaaaagcttattgtg
gaaggcgagggagtgcgtcagcgaattgatgaatatcttgagatgatggctccagatttg
cgcagcaaggttgaatattgggatcctgctgagcatgaaggcaaagacgttttcgataag
tggcagattgatagtcagcttcgtaagggcatggagcgtcaggtttatttgccagctggc
ggctctattgtgattgatcgtacggaagcaatgactacgatcgatgtgaatactggacga
tttattgggcgtggtaagtctttggaagaaacggttactcgttgtaatttggaggcttct
gaagagattgcgcgccagcttcgtttgcgcgatattggtggcatggtcatgattgattat
gtggatatggttatgccagcgaaccgcgatttggttttgcgtaggcttttggaatgcttg
gctagggatcgcacgaagcatcaggttgctgaagttacgtctcttggtcttgtgcaaatg
acgcgtaaacgcgttggccaaggcttagttgaagcgttctctgaagagtgtccaacgtgc
aagggacgtggatttattttgcacgatgagcctactgtttcttcggaatatgcggatcct
tacgcgcttaagggcggagatccttttgttaaaacaaacaagtatggtcacggaagcgca
acggaacagcctgctcctgttaagcagcagggttctagcgcggaagtgagagctaagtta
gcgcgtatagctgccgcatctgtaattactgacgcagctcataaatctgaagaagaaacg
cagtatagcaattttttgaattctgacaaagagtctatatcttctaaggcggatgaaact
ggcgaaactgcggatgctggcgaaactgctgaaactagtgaagttgcggaaactagtgaa
gctgataaaacttctgaagaattagttgaaaataatttagaggatactacgcaagagatt
gctgagtatactgcggagcaacctacgcaagaacctgcgcaagatactacgcaagaacct
atgcaagatgctacgcaggaaactacgcaagaaactacagaaagtgatgattga
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