Gardnerella swidsinskii: K9E37_03650
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Entry
K9E37_03650 CDS
T08402
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9E37_03650 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsw03021
]
K9E37_03650 (rho)
03019 Messenger RNA biogenesis [BR:
gsw03019
]
K9E37_03650 (rho)
Transcription machinery [BR:
gsw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
K9E37_03650 (rho)
Messenger RNA biogenesis [BR:
gsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K9E37_03650 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
SAP
Spore_III_AA
VWA_2
Motif
Other DBs
NCBI-ProteinID:
UQA88120
LinkDB
All DBs
Position
953772..955733
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AA seq
653 aa
AA seq
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MATGQNLEKMKLSELKDLAKQMGLRGTSTMRKPELVATLTAARNGGEAPAGVSVRVPRDV
VNANKTADTSTDIEDVRSSKDNSDLEALEVLVPNAASDRRYRDEEDFGNKNYRRDANRNN
TFQRRRSSEDRNDNRDRREDGMDSHELDQILATLPGEDSHAEGEPRRQRVASRDFDREEQ
QNRADRFQRRMRGRARDYDESRSDYSDRQNHSERMNRVEREDRDERRAERGERQDCNDRN
VRLDRDARDAREEHDLRESRREESQEELVPVAGIVDVLESYAFVRTSGYLPGPNDVYVSM
SQIKKYGLRKGDAVQGSIRAPREGDRRNQRQKFVPLQTIDSINGMSVEEAQSRPQFAKLT
PLYPQERLKQETTPNRMLGRVIDLVAPIGKGQRGLIVSPPKAGKTITLQNIANAITTNNP
EVHLMVVLVDERPEEVTDMERTVQGEVISSTFDRPATDHTTVAELAIERAKRLVELGQDV
VVLLDSMTRLARAYNIAAPTSGRILSGGVDAQALYPPKKFFGAARNIEDGGSLTIISSAL
VETGSKMDEVIFEEFKGTGNMELRLSRDLADKRLFPAVDINASGTRREELITPAADLPVI
YRLRRLFGGLEAEQAYQTLIPRLKKTASNRDFLAAITQQTGTATNNSSSTTIA
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacaggccagaatcttgaaaaaatgaagctttcagaattgaaagatcttgcgaaa
caaatgggtttgcgcggtacatctacaatgcgtaagcctgagttggtggctacactgacg
gctgctcgtaatgggggagaagcgcctgcaggtgtaagtgttcgtgttcctcgtgatgtt
gtgaatgctaataaaactgcagatactagtacagatatagaagatgttaggtcatcgaaa
gacaatagtgatttagaagcgttagaagttttggttcccaatgctgcttcagatcgtcgc
tatagagacgaagaagattttgggaataaaaattatcgacgcgatgcgaatcgtaataat
acattccagcgtcgtcgttcctcagaagatcgtaatgataatcgcgatcgtagagaagat
ggtatggattcgcatgagttggatcaaattttggcaacattgcctggtgaagattctcat
gcagagggtgaaccgcgtcgtcagcgtgtagcttctcgtgactttgatagagaagaacaa
caaaatcgtgctgatcgtttccagcgtcgtatgcgcggtcgtgcacgtgattacgatgag
tctcgttcagattattcagatcgacagaatcattcagaacgcatgaatcgagtagaacgt
gaagatcgtgatgaacgtcgtgctgagcgtggagaacgtcaagattgtaacgatcgcaat
gttcgtcttgatcgcgatgcacgcgatgctcgcgaagagcatgatttacgtgagtctcgt
cgtgaagagtctcaggaagagctcgtgccagtagctggaattgttgatgtcttagaatct
tacgcattcgtgcgcacttctggttatttgcctggtcctaacgatgtttatgtttcaatg
agccaaattaaaaaatatggcttacgcaagggtgatgcagttcaaggctccattcgtgct
cctcgcgaaggcgatcgtcgaaatcagcgccaaaagtttgttcctttgcaaacaatcgat
agcattaatggaatgagcgttgaagaagctcagtctcgaccgcaatttgctaagttgacg
ccgttatacccacaagagcgtttgaagcaagaaactactccgaatcgcatgttgggacgt
gttattgatttagttgccccaattggtaaaggtcagcgcggtttgattgtgtcgccacca
aaggctggtaaaaccattactcttcagaatattgcaaatgcaattactacaaataatcct
gaagtgcatcttatggttgtgcttgtcgatgagcgtccagaagaagttaccgatatggaa
cgcactgtgcaaggcgaagtgatttcttctacattcgatcgtcctgcaacggatcacact
actgttgctgagcttgctattgagcgcgctaagcgtttggttgagcttggccaggatgtt
gtggttttgcttgattctatgactcgtttggctagagcctacaatattgctgctcctact
tctggtcgtattctttccggtggtgttgatgctcaggcgttgtacccaccaaagaagttc
ttcggtgctgctcgaaatattgaagacggcggctctttgacgattatttcttctgcattg
gttgaaaccggctctaagatggatgaagtaatcttcgaagagtttaagggcactggaaat
atggaattgcgtttgagtagagatttggctgataagcgtctcttcccagcagtagatatt
aatgcttctggaactcgtcgcgaggagttaattactccagctgcagatttgccagttatt
tatcgtttgcgccgtctctttggtggtcttgaggcagagcaagcgtatcagactttgatt
cctcgattgaagaaaactgcttcaaaccgtgatttcttggctgccataactcaacaaact
ggcactgctacgaataattcttcttctacgactattgcgtag
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