Gardnerella swidsinskii: K9E37_04185
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Entry
K9E37_04185 CDS
T08402
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9E37_04185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsw03019
]
K9E37_04185
03016 Transfer RNA biogenesis [BR:
gsw03016
]
K9E37_04185
Enzymes [BR:
gsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K9E37_04185
Messenger RNA biogenesis [BR:
gsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K9E37_04185
Transfer RNA biogenesis [BR:
gsw03016
]
Prokaryotic type
tRNA degradation factors
K9E37_04185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
S1_2
DUF1773
KH_5
Motif
Other DBs
NCBI-ProteinID:
UQA88211
LinkDB
All DBs
Position
1071286..1074066
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AA seq
926 aa
AA seq
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MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQ
VVETILAINPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKV
ICDAQNELKRIAAKETKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEI
KEGVRAAIAEEFTDMDEAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSA
EVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPGREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAAALQQAHEARATILEVINECIDCPAEMSPFAPRIITTTIPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVYISSEGGEAAEKAKGIIDSIANPRVPKAGET
FTGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVD
ERGKISLAIPGFEDQESSAPAVRENRSRSSRDDRDSRDSRGDYRRSRRDDRDNHDRADRA
DRDERPRRRMRDDRDDRDRMDRNDRYMDRDNRYDDRNTRRDDRRADRADRDNRYSDNDFD
ERPRRRVRDDRDDRYENRDDRDDRADRDDREDRSNRRDSENRRVSDRKPRYAADDDHYDE
YRSAREERAERPRRRVRRDFDPFEED
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
gtggagggtcccgaaattaaggctgtagaagccgttattgataatggttcatttggtaag
cgtacgctacgctttgaaactggtcgacttgctcagcaagcagatggtgctgttgccgca
tatttggatgacgattccatgattttgtcgacgacgactgcaggatctagtccgaaggaa
aattacgacttcttcccattaactgttgatgtggaagaaaaaatgtatgctgctggaaag
attccaggttcgttcttccgtcgtgaaggtcgtccttctaacgaagcaacgttggcatgc
cgtattattgatcgcccgttgcgcccgttgttcccacacactttacgtaacgaagtgcaa
gttgttgaaacaattctggcaattaatccagatgatgcttacgatgttattgctttgaat
gcggcgtctgcatctactatgatttctggtttgccatttgagggcccagtttctggcgtt
cgtttggctttgattgatggccagtgggttgctttcccacgttggagtgagcgcgagcgt
gcagtatttgagattgttgtggctggtcgtgtgattgaaaacggcgatgttgctattgca
atgattgaggctggtgctggtaagaatgcttggaatttgatttacaatgatggccagacc
aagccagatgagcaagttgtagccggtggtttggaagctgcaaagccatttattaaggtt
atttgcgatgctcaaaatgagttgaagcgtattgcagctaaggaaactaaggaattccaa
ctcttcccagaatatactgacgaactttatgctcgtattgacgagattgctcatgctgat
ttgaatgaagctctttctattgctgaaaagcttcctcgtcaagatcgcatcgctgaaatt
aaggaaggcgtgcgtgctgcaatcgctgaagaattcactgatatggacgaagccgaaaag
gaaaaggaactcggcaatgcgtttaaagaattgcagcgtcaaattgttcgtcgtcgtatt
ttgactgaagattatcgtattgatggtcgcggtttgcgcgatattcgtacgctttctgca
gaagttgatgttgtgcctcgcgtacacggttctgcactcttccagcgtggtgaaacccag
attttgggtgtgactactttgaatatgcttaagatggagcagcaagttgatgcactttct
ggcccacaaaccaagcgttatatgcacaactacgaaatgcctccatactccactggtgaa
actggtcgcgttggttctccaaagcgtcgtgaaattggtcacggtgctttagctgagaag
gctttggttccagttttgccaggtcgcgaagagttcccatacgctattcgtcaggtgtct
gaagctattggttctaacggttctacttctatgggttccgtttgtgcttctacgctttct
ttgcttgctgctggcgtgcctttgaaggctccagttgctggtattgctatgggcttagtt
tctggtgatgttgatggaaagcatatcttcaagactttgactgatattctcggtgcagaa
gatgcatttggtgatatggacttcaaggttgctggtacttctgaattcatcactgctttg
cagctcgatacgaagcttgatggtattccagctgatattttggctgccgctttgcagcag
gcacatgaagctcgtgcaacgattcttgaagttattaacgaatgcattgattgtccagct
gagatgagtccattcgctccacgcattattacaaccacaattcctgtagacaagattggt
gaggtaattgggcctaagggcaagatgattaaccaaattcaggaagaaactggtgctgaa
atcgctattgaagatgacggtactgtttacatttcttctgaaggcggagaagctgctgag
aaggctaagggaatcatcgattctattgcaaatcctcgtgtgccaaaagctggtgaaact
ttcacaggcaaggttgttaagaccacaagctttggagcttttgtgaatttgactcctgga
actgacggtttgcttcacatttcacagattcgcaatttagcaaatggtgagcgcattgac
actgttgaagatgtgctgaaggaaggcgataatgttgaagttatcgtacaaagcgtagat
gagcgtggcaagatttctttggctattccaggttttgaagatcaagaatcttctgctcca
gcagtgcgtgaaaatcgttcccgcagttctcgcgacgatcgcgattctcgtgactctcgt
ggcgattaccgtcgttctcgccgtgacgatcgcgataatcatgaccgtgcggatcgtgca
gatcgcgatgagcgtcctcgtcgccgcatgcgcgatgaccgtgacgatcgagatcgcatg
gatcgaaatgaccgatacatggatcgcgataaccgttatgatgaccgcaacactcgtcga
gacgaccgtcgtgcagatcgtgcagatcgcgataaccgttacagcgataacgattttgat
gagcgtcctcgtcgccgcgtgcgcgatgaccgtgacgatcgttacgaaaatcgcgatgac
cgtgacgatcgtgcagatcgtgacgaccgtgaagatcgctcaaatcgtcgagattcagaa
aatcgtcgcgtatctgatagaaagccgcgttatgcagctgatgacgatcactatgacgag
tatcgttcggctcgcgaagagcgcgcagagcgtcctcgtcgccgcgtgcgtcgcgatttt
gatccatttgaggaagattaa
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