Gardnerella swidsinskii: K9E37_04935
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Entry
K9E37_04935 CDS
T08402
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03420
Nucleotide excision repair
gsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9E37_04935
03430 Mismatch repair
K9E37_04935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsw03400
]
K9E37_04935
Enzymes [BR:
gsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9E37_04935
DNA repair and recombination proteins [BR:
gsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K9E37_04935
MMR (mismatch excision repair)
Other MMR factors
K9E37_04935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
UQA88346
LinkDB
All DBs
Position
1228281..1231253
Genome browser
AA seq
990 aa
AA seq
DB search
MSVSMGASMNANMSAKDSDYGYVSDLLGNPVDSFDSDDSFYENVADVNDYANYSYDEYAD
AYAKEPDFTQQEYASDQESVPPQESVPSQQEALAQQELLPQESQEYSQNSAHSRVAVDAQ
KLLDGLNPQQSQAVQYDGPALLIGAGAGSGKTRVLTRRIAWILSQKDAWPSQILAITFTN
KAAAEMRERLSKLIGSEANTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERLVK
IIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYANDYKPGVAGQQIAHAGNSEA
VYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAAQYYRRKFRYILVDEYQDTNHA
QYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSDQSIYAFRGADIRNIQDFEKDFPN
ATTIMLEQNYRSTQTILDAANAVISHNQGRKPKKLWTALGKGTPITGYAADSAQQEAAWV
AQEIARLAGEEGVAYSDMAIMYRANAQSRSLEDALVKAGLPYQLVGGTKFYERREVKDAL
AYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQGVSFWQALEHLESIEGMPT
RTATKLKEFRELMHNLITCMQNDDSKPSKVIDSILNDSGLLEDLQRSEDPQDAARVDNLS
QLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTGKVTLMTLHTAKGLEYPVV
FLTGMEQGTFPHSRALEDDGELCEERRLAYVGITRAKQRLYVTRAAVRAQWGQAQDMLPS
QFLDEIPDNLIDWKRRESDVERWGASSRRGDDFDSDFDSDFGGWDDDYSDAFSEKTTYGG
SIYGSEKSHGSKSYGRNKSYGSSSYSSSYEKSYSKSYGSSYGSSYGSSYGSSYSKSNWSK
SSAVKTRKVTAKTATSTSATKVGSTSAVMNKDNHLNIQDFQVGDKITHDTYGLGTVLATQ
DKGRNSIITVDFGSDGVKRLMLRVAPIEKL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtaagtatgggcgcaagtatgaatgcaaatatgagtgcaaaagatagcgattac
ggatatgtaagtgatttgttggggaatccagttgattcgttcgattctgacgatagtttt
tacgagaatgttgcggatgtgaatgattatgccaactacagttacgacgagtatgctgac
gcttatgctaaagagcctgattttacgcagcaagaatatgcgtctgatcaagaatcagtg
cctcctcaagaatcagtgccttcccaacaagaagctcttgcccaacaagaactgcttcct
caagaatctcaagaatattctcaaaattccgcacattctagagttgcagttgacgcgcaa
aaactactcgacggcttaaatccgcaacaatctcaagcagtccaatacgacggaccggca
ctgcttattggagcaggagctggaagcggcaaaacgcgagttcttacgcgaagaatagct
tggatattaagccaaaaagatgcctggccaagccaaattcttgccatcacttttacaaac
aaagcagctgccgaaatgcgtgaacgtttaagcaaacttattggtagcgaagcaaatact
atgtgggtttcgacgttccactctgcatgtgtgaaaatacttcgcagatcaggacagtat
attggcttaaaatcaggcttttctatttacgatacttccgattgcgagcgattagtaaaa
attattgcaacagagcttaacgttgatattaagcgttttacgccacgcagcattttgggc
aagatttcggattgcaaaaatagtttaatcacttggcgtgagcaactagacatgtatgct
aacgattacaagcctggtgttgcaggtcaacaaattgcgcacgctggcaattctgaagct
gtctacgcaactatttatgcggaatatcagcatcgtttatctcaagcaaatgcggttgat
tttgacgatttaattatgcgaactgtgcaactcatgcgcgaagtaccagaagctgcgcaa
tattaccgacgtaagttccgctatattcttgtagacgagtatcaggatacgaatcacgct
caatacgagcttattcgcgagcttgctggagtggatgtaaagcaaaatagtgcaaatcca
tctcagcaaaataacactcctgcatcaatcacagttgtaggcgactccgaccagtcgatt
tacgctttccgcggagcagatattcgcaatattcaagactttgaaaaagatttcccaaac
gctacaactattatgcttgagcaaaattatcgctctacgcaaactattttggatgctgca
aatgcagttatttcgcataatcaaggacgaaagcctaaaaaattgtggacggcattaggt
aagggcactccaattactggttatgcagcagacagtgctcaacaggaagcagcttgggtt
gcgcaagaaatagcgcgattagcaggtgaagagggcgttgcttattcggatatggcgatt
atgtatcgcgctaatgcacagtctcgttcgctggaagatgcgctcgttaaagcaggtctt
ccgtatcaacttgttggcggcacgaagttttacgagcgtcgcgaagtaaaagatgcgctc
gcatacttgcaatctatggcaaacccagatgacgatgtgaatatgcgccgaattttgaat
gtgcctaagcgtgggcttggagcgcgtgcggaggctttgctgacgctttacgctcaaaca
caaggagttagcttctggcaagctttggagcatttggagtcaatcgaaggcatgccaact
cgcactgcaaccaagcttaaagagttccgcgagcttatgcacaatttaattacttgtatg
caaaacgatgactcgaaaccttctaaagttattgacagcatactgaacgacagtggtttg
ctggaggatttgcaacgttctgaagatcctcaagatgccgctcgcgtggataatttgtcg
caattgcagtcggttgcagctgagtatgagcagaatacgccggatgctagtgttgctgga
ttccttgaaacgacagcgcttgtggctgattcggatcaattgccggatgaaaatgaggac
actggtaaagttacgttgatgacgcttcacacggctaagggcttggagtatccggttgtg
ttcctaactggcatggagcagggaacttttccgcattctcgcgctttggaagacgatggc
gagctttgcgaggagcgtcgtcttgcttatgttggtattactcgagctaagcagcgtttg
tatgttactcgtgctgctgttcgtgcgcaatgggggcaggctcaagatatgcttccaagc
cagtttttggatgagattccagataatttgattgattggaagcgcagagagtctgatgtt
gagcgttggggcgcttcgtctaggcgtggcgatgatttcgatagcgattttgatagtgat
tttggcggctgggatgacgattatagcgatgcgtttagtgaaaaaacaacttatggtgga
agcatttacggttctgaaaaatcgcatggctctaagtcttacggaagaaataaatcgtat
ggctcgagttcttacagctcctcttacgaaaagtcttatagcaagtcttacggctcgtct
tacggctcgtcttacggttcttcttacggctcgtcttattctaaatcgaattggtctaag
tcaagtgcagtaaaaacgcgcaaagttactgcaaaaactgcgacttcaacaagcgcaaca
aaagttggttcaacttctgcagttatgaataaagacaatcatctaaatattcaagacttc
caagttggcgacaaaattactcacgatacttacggcttaggaaccgtgttagcaacgcaa
gataagggcagaaactcaattattacagtcgatttcggctccgatggagtaaagcgacta
atgcttagagttgcaccaatcgaaaaattgtaa
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