Gordonia terrae: BCM27_07205
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Entry
BCM27_07205 CDS
T04440
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gta
Gordonia terrae
Pathway
gta03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BCM27_07205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gta03400
]
BCM27_07205
Enzymes [BR:
gta01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BCM27_07205
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BCM27_07205
DNA repair and recombination proteins [BR:
gta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BCM27_07205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Arg_repressor_C
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ANY22618
UniProt:
A0AAD0K5Z9
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All DBs
Position
1580657..1581547
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AA seq
296 aa
AA seq
DB search
MPELPEVAAIADYVDGRAAGLPIRRVDVASLSVLKTADPPYTALMDRIVESVGRVGKYLV
IRTVPGSAATASEPLLQLVIHLSRAGWVRWSEDLSPKPLRPGGKSPIALRVHCGLPGEGF
DVTEAGTQKRLAVWLVRELTEVERIAGLGPDALELTAEEFAEILAGTTGRIKNVLTDQHT
IAGIGNAYSDEILHTARLSPFASSKTLKPDQVATLYDAMRGVLTDATGRLEGQAVARLKS
EKRTGLRVHARTGLPCPVCGDIVREVSFADRSFQYCATCQTGGKVLADRRMSRLLK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctcccagaggtggccgccatcgccgactacgtcgacggtcgagcggccgga
ctcccgatccgtcgggtcgacgtcgcgtcgctgtcggtgctgaagacggccgatccgccc
tacacggcgctgatggaccggatcgtcgaatccgtcggacgtgtggggaagtacctggtc
atccggaccgttcccggttcggcggccaccgcgtcagagccgttgttgcagctggtcatc
cacctgtcgcgcgcgggctgggtgcggtggagcgaggacctgtcgcccaaacccctgcgg
ccgggcggcaagagcccgatcgccctgcgcgtgcattgtggactacccggtgagggattc
gacgtcaccgaggccggcacccagaagcggctcgccgtgtggctggtccgcgaactcacc
gaggtcgaacgcatcgcgggccttggacccgatgcgctcgaactgacggccgaggaattc
gcggagatcctcgccgggacgaccggccggatcaagaacgtgctcaccgaccagcacacc
atcgccgggatcggcaatgcgtactccgacgagatcctgcacaccgcacgtctgtcgccg
ttcgcctcgtcgaaaacgctgaagcccgaccaggtcgccactctctacgacgccatgcgc
ggcgtgctcaccgacgcgacgggtcgcctggaaggccaggccgtcgcgcggctgaagtcc
gagaagcgcaccggcctgcgcgtacacgcccgcaccggcctgccgtgcccggtgtgcggc
gacatcgtccgcgaggtgtccttcgccgaccggtccttccagtactgcgccacatgccag
acgggcgggaaggtgctcgccgatcggcggatgtcgcgattgctgaagtag
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