Gordonia terrae: BCM27_10315
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Entry
BCM27_10315 CDS
T04440
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gta
Gordonia terrae
Pathway
gta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCM27_10315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gta03019
]
BCM27_10315
03009 Ribosome biogenesis [BR:
gta03009
]
BCM27_10315
Enzymes [BR:
gta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCM27_10315
Messenger RNA biogenesis [BR:
gta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCM27_10315
Ribosome biogenesis [BR:
gta03009
]
Prokaryotic type
rRNA helicases
BCM27_10315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
ANY23137
UniProt:
A0AAD0K6A0
LinkDB
All DBs
Position
2274365..2276137
Genome browser
AA seq
590 aa
AA seq
DB search
MSTSDHGEHDAPTDPSVGTFDDLEIDPRVRAAVTDVGYETPSPIQAATIPTLLSGRDVVG
LAQTGTGKTAAFAIPILSRLDTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLP
IYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAE
DVERILAETPDTKQVALFSATMPSAIRRLAQRYLNSPQEITVKAKTATAQNITQRYLQVS
HQRKLDALTRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTI
NQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLF
VSPRERHLLRAIERATRQTLTEIGLPSVDDVNAQRVAKFADSITQNLSSDNLDLFRGLIE
NYARDNDVAMADIAAALALETRDGGFLMTPDPPQSEKRSERERAPRRPGASFATYRIAVG
RKHKVSPGAIVGAIANEGGLTRADFGNISIRDDFSLVELPDDLDSETLSNLRHTKIGKNP
IDIRKDMGSPRTRGGGKRGAGGHGGGRDGRRGDSWGKRPSPRVAGRGRHS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttccgatcacggcgagcacgacgccccgaccgacccctccgtgggcacgttc
gacgacctcgagatcgatccgcgcgttcgcgccgccgtcaccgacgtgggctacgagacg
ccctcgccgattcaggcggccaccatcccgacgctcctgtcggggcgcgacgtggtgggt
ctggcgcagaccggtacgggtaagaccgcagccttcgccatccccatcctgtcccggctc
gacacgtctgcgcggactccgcaggcgctgatcctggcgccgactcgtgagctcgccctg
caggtctccgaggcgttcggccgttactcggcccatatgcccgaggtgaaggtcctgccg
atctacggcgggcagtcctatggcgtccaactcgccgggctgcgtcgtggcgcgcaggtc
atcgtcggtaccccgggtcgtgtgatcgaccacctcgacaagaagacgctcgacatctcg
gggctggagttcctcgtcctcgacgaggccgacgagatgctgacgatgggcttcgccgag
gacgtcgaacgcatcctggccgagaccccggacaccaagcaggtcgccttgttctcggcg
acgatgcccagcgcaatccgacgtctcgcacagcgctacctgaactcgccgcaggagatc
acggtcaaggcgaagaccgcgaccgcgcagaacatcacgcagcgctacctccaggtctcc
caccagcgcaagctggatgcgctgacgcggttcctcgaggtcgagaccttcgacgcgatg
atcgtgttcgtccgtaccaagcaggcgaccgaagagctggccgagaagttgcggtctcgc
ggattctccgcggtggccatcaacggcgacctcgcgcaggcgcagcgtgaacggaccatc
aaccagctcaagaacggttcgatcgacatcctggtcgcgaccgacgtcgccgcgcgcgga
ctcgacgtcgatcgcatctcgcacgtcgtcaactacgacatcccgcacgacaccgagtcg
tacgtgcaccgcatcggccgcacgggtcgcgccggtcgttcgggcaacgcgctgctgttc
gtctcgccgcgcgagcgccacctgctgcgcgccatcgagcgcgccacgcgacagacgctc
accgagatcggtctgcccagtgtcgacgacgtcaacgcgcagcgagtggcgaagttcgcc
gactccatcacgcagaacctgtcgtcggacaatctcgatctgttccgcgggctgatcgag
aactatgcgcgggacaacgacgtcgcgatggccgacatcgccgccgcgctggcactcgag
acgcgggacggcggattcctgatgaccccggatccgccgcagtcggagaagcgctccgag
cgcgagcgtgcaccgcgtcgcccgggcgcgagcttcgcgacgtaccggatcgccgtcggc
cggaagcacaaggtgtcgcccggcgcgatcgtcggtgccatcgccaacgaaggcggcctg
acccgagccgacttcggcaacatcagcatccgcgacgacttcagcctcgtggaactgccc
gacgacctcgacagcgagaccctgtccaatctgcggcacacgaagatcggcaagaacccg
atcgacatccgcaaggacatggggtcaccgcgtacgcgtggcggcggcaagcgcggagcg
ggtggtcatggtggcggacgcgacggtcgccgcggcgacagctggggtaagcgtccgtca
ccgcgcgtggccggtcgcggtcgccactcctga
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