Geobacillus thermoleovorans CCB_US3_UF5: GTCCBUS3UF5_2440
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Entry
GTCCBUS3UF5_2440 CDS
T01676
Name
(GenBank) DEAD-box ATP-dependent RNA helicase cshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gte
Geobacillus thermoleovorans CCB_US3_UF5
Pathway
gte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTCCBUS3UF5_2440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gte03019
]
GTCCBUS3UF5_2440
03009 Ribosome biogenesis [BR:
gte03009
]
GTCCBUS3UF5_2440
Enzymes [BR:
gte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GTCCBUS3UF5_2440
Messenger RNA biogenesis [BR:
gte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GTCCBUS3UF5_2440
Ribosome biogenesis [BR:
gte03009
]
Prokaryotic type
rRNA helicases
GTCCBUS3UF5_2440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEV17570
LinkDB
All DBs
Position
237269..238672
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AA seq
467 aa
AA seq
DB search
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIDRQIRALKKH
PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLK
MLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcaagaattaggattaagccaagaagtgatgaaagcgatcgagcggatg
gggtttgaagagacgactccgattcaagcgaagacgattccgctcagtctgcaaaataaa
gacgtaatcggtcaagcgcaaaccggaacggggaaaacggcggcgtttggcattccgatc
gttgagaaagtgaatgtgaaaaacagcgctgttcaagcgctcgttgtcgcgccgacgcgt
gagctcgccatccaagtatcagaagagctgtacaaaatcggcgccgtcaagcgcgtgcgc
gtcttgccgatttacggcggtcaagatatcgaccggcaaatccgcgctttgaaaaaacat
ccgcacgtgatcgtcgggacgccgggccgtattatcgaccatatcaaccgcgggacgctc
cgccttgagcatgtgcatacggtcgttctcgatgaggcggatgaaatgctcaatatgggc
tttatcgaagatattgaggcgattttaagccatgtgccggccgagcggcagacgttgctg
ttctcggcgacgatgccggatccgattcgccgcattgccgagcgcttcatgaacgagccg
gaacttgtcaaagtgaaggcaaaggaaatgaccgtgccgaacattcaacagtactactta
gaagtgcacgagaaaaagaaatttgacattttgacgcggcttcttgatattcaggcgccg
gagctcgcgatcgtgttcggccgcacgaagcgtcgtgtcgatgagctggcagaggcgctc
aacttgcgaggctatgcagcggaaggcattcacggtgatttaagccaagcgaaacggctg
tcggtgctgcgcaagtttaaggaaggtgcgattgaaattttagtggcgacggatgttgcg
gcgcgcggcttggatatttccggcgtaacgcacgtgtacaactttgatattccgcaagac
ccggaaagctatgtccaccggattgggcgcaccgggcgcgccggcaagacaggggtggcg
atgacgtttgtcactccaagggagatcggccagcttcaccatattgagcggacgacgaag
cggaaaatggagcggatgaagccgccgacacttgatgaggcgctcgaaggccaacagcgt
atcgctatcgaaaagcttctcaacgtcgtggagaccgaaaacctgtcattttacaaacgg
gcagcggaagaattgcttgaagagcacgattcggtaacgattgtcgctgcctgcttgaaa
atgttgacgcgcgagccggatacgacgccggtgcaattgacggaagagccgcctttagcg
gtcaagcgggagaaaaaacggggcggccgcccggacggctcagcccgcagccggacgaag
aaacggcggattacggcgcattaa
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