Geobacillus thermoleovorans CCB_US3_UF5: GTCCBUS3UF5_37970
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Entry
GTCCBUS3UF5_37970 CDS
T01676
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gte
Geobacillus thermoleovorans CCB_US3_UF5
Pathway
gte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTCCBUS3UF5_37970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gte03021
]
GTCCBUS3UF5_37970
03019 Messenger RNA biogenesis [BR:
gte03019
]
GTCCBUS3UF5_37970
Transcription machinery [BR:
gte03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GTCCBUS3UF5_37970
Messenger RNA biogenesis [BR:
gte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GTCCBUS3UF5_37970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
AEV21097
UniProt:
A0ABM5MNN9
LinkDB
All DBs
Position
complement(3486448..3487722)
Genome browser
AA seq
424 aa
AA seq
DB search
MELTLAALENMKLKELYELAKQYKISYYSKLTKKELIFAILKARAEQDGLFFMEGILEII
PSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLHVEAV
NGEDPEVAKERVHFPALTPLYPNRQMKLETTPDKLSTRIIDLIAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPDVELIVLLIDERPEEVTDIERSVQGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIPKEHLEKLWAIRKTMADSPDFIERFLNKLRRTKSNEEFFALLDQEWKQGG
PPRL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacgttagcagcactagaaaacatgaaattgaaggagctgtatgagctcgcc
aagcaatacaaaatttcatactacagcaagttgacgaaaaaggagcttatttttgcgatt
ttgaaagcgcgtgccgaacaagacggcctctttttcatggaaggcatcctcgaaatcatt
ccgtcggaaggattcggctttttgcgcccgatcaactattccccgagctcggaagacatt
tacatttccgcttcccaaatccgccgttttgatttgcgcaacggggataaagtatccggc
aaagtgcggccgccgaaagaaaatgaacgctacttcggcttgcttcatgtcgaagcggtc
aacggcgaagacccggaagtcgccaaggagcgcgttcactttccagcgttgacgccgctt
tacccgaatcggcaaatgaagctggagacaacgccggacaagctgtcgacccgcatcatc
gacttgatcgctcccgtcggctttggccagcgcgggttgatcgtcgcgccgccgaaagct
ggcaagacgatgctgctgaaggaaattgccaacagcatcaccacaaaccacccggatgtc
gagttgatcgtcttgctcattgacgaacggccggaagaagtgaccgacatcgagcggtcg
gtgcaaggcgatgtcgtcagctcgacgtttgatgaggtgccggaaaaccatattaaagtg
gccgagcttgtcttagaacgggcgatgcgattagttgagcataagcgtgacgtcgtcatt
ttaatggacagcatcacccgcctcgcccgggcgtacaacttggtcattccgccgagcgga
cgcacgctctcgggcgggatcgacccagcggcgtttcatcgcccgaagcggtttttcggc
gcggcgcgcaacatcgaagaaggcggcagcttgacgattttggcgaccgccctcattgac
accgggtcgcgcatggatgacgtcatttacgaggaatttaaaggcaccggcaacatggag
ctccatcttgaccgctcgctcgccgagcgccgcatttttccggcgattgacattcgccgc
tcgggaacgcgcaaagaggagctgctcatcccgaaagaacatttggaaaagctgtgggcg
atccgcaaaacgatggccgattcgcccgactttatcgagcggtttttgaacaaattgcgc
cggacgaagtcaaacgaagagtttttcgccttgctcgatcaggagtggaaacagggcggc
ccgccccgtctgtag
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