Parageobacillus thermoglucosidasius C56-YS93: Geoth_0439
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Entry
Geoth_0439 CDS
T01531
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth02020
Two-component system
gth02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Geoth_0439
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Geoth_0439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gth03021
]
Geoth_0439
Transcription machinery [BR:
gth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Geoth_0439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
MarR_2
HTH_23
HTH_10
HTH_IclR
HTH_Crp_2
HTH_17
HTH_32
WHD_RNase_R
Sigma70_r4_2
HTH_24
Xre-like-HTH
HTH_3
Fe_dep_repress
HTH_11
HTH_21
HTH_Tnp_ISL3
HTH_28
TrmB
HTH_AraC
LacI
HTH_38
HTH_26
AbiEi_4
HVO_A0261_N
Motif
Other DBs
NCBI-ProteinID:
AEH46476
LinkDB
All DBs
Position
460262..461575
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AA seq
437 aa
AA seq
DB search
MRAELWQEQRLKLSLTKELTQAIELLQYSAVELQSFLYEQSLDNPFLEIRDYRLKRSYRD
SSDKEKQRWIENISTHSETLSLHLIAQLPALSLSEREERVVRYMIASLDEDGYLRVEIEE
IAARLAISKQEAEKALQIIQSLEPAGVGARSLQECLYLQLKRLPHRDELAEQIVQHHFSL
FVEKAWKTLAKQLDIDIASLQRVWDLIRTLEPRPGIHYTKEMPHFIVPDLIIERSDEGDW
RIFCNDDVHPELAWNRAYEQKISGYRDGQVQSFIKDKYRQFLWLTKSLEQRKQTLLNIMH
VIVDKQKQCLEAGFAALKPLTMREVAEELGIHESTVSRAVKNKYVQTPFGTVELRRFFSN
AVSSAYADDDAASSVKVKMFIKQLIEQENKQRPLSDQKIADLLHERYGVAVSRRTVAKYR
EQLHIPSSAKRKQYVGK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgaattatggcaagaacagcggctgaagttatcactgacaaaggaactgacg
caagcaatcgaattattgcaatattccgctgtggagctgcagtcgtttttatatgaacag
tcgttggataacccgtttctggaaattcgcgattaccggctgaagcgcagctaccgcgac
tcgtcggataaggaaaagcagcggtggatcgaaaatataagcactcattcagaaacgctt
tcattgcatttaatcgcacagcttccagccctgtcactttcagaacgcgaagaacgtgtc
gtacgttatatgatcgcttcccttgatgaagatggatatttgcgggtagagatcgaagag
atcgcggcacggcttgctatttccaaacaggaagcggaaaaagcgctgcagatcatccag
tcgttagagccggctggcgttggcgcccgcagtttgcaagaatgtttatatttgcagcta
aagcgtttgccacatcgcgatgagctggcggaacaaatcgtacagcatcatttttcgcta
tttgtcgaaaaagcgtggaaaacattagcgaagcagcttgacatagacattgcttcattg
cagcgcgtatgggatttaatccgcacgcttgagccgcgccccggcatccattatacaaaa
gagatgccccatttcatcgttcctgatcttattattgaacggagcgatgaaggggattgg
cgcatcttttgcaatgatgatgtgcatccggagcttgcctggaatcgggcatatgaacaa
aaaatttccggctatcgtgatgggcaagtgcaatcgtttatcaaagataaataccggcaa
tttttatggttaacgaaaagcttggaacagcgcaaacaaacgttgctcaatattatgcat
gtcattgttgataaacagaaacaatgtttggaagcggggtttgccgctttaaagcccctt
acgatgcgggaagtggcggaagagctcggcattcacgaatctactgtcagccgtgccgtg
aaaaacaaatacgtgcaaacaccgtttggcaccgtggaacttcgccgctttttttccaac
gctgtttcatccgcttatgcggacgacgatgccgcttcttcggtaaaagtgaaaatgttt
attaagcaattaattgaacaggaaaataagcagcggccgctttccgaccaaaagatcgcc
gacttgctgcatgagcggtacggtgtagccgtctcacgcagaacggttgcaaaatatcgc
gagcaactgcatattccgtcatcggcaaaacgaaaacagtatgtagggaagtga
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