Parageobacillus thermoglucosidasius C56-YS93: Geoth_0893
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Entry
Geoth_0893 CDS
T01531
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03030
DNA replication
gth03430
Mismatch repair
gth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Geoth_0893
03430 Mismatch repair
Geoth_0893
03440 Homologous recombination
Geoth_0893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gth03032
]
Geoth_0893
03400 DNA repair and recombination proteins [BR:
gth03400
]
Geoth_0893
Enzymes [BR:
gth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Geoth_0893
DNA replication proteins [BR:
gth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Geoth_0893
DNA repair and recombination proteins [BR:
gth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Geoth_0893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AEH46891
LinkDB
All DBs
Position
865316..868630
Genome browser
AA seq
1104 aa
AA seq
DB search
MSFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQ
PIIGMITDIVLEGEEAYPLVLLAKNETGYQHLMKISSTIQTKTREGIPEKWLWHYRSGLI
ALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQRGENKRKEPYEQQLIALG
EETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGTVIETETAAAGERYLTPPEEMTERFSD
LPAAVENSGKIAEQCHLDIEFGSLKLPKYPVPTKESADDYLRRLCMEGLHERVPSPSDRY
RERLEYELSVIRQMGFSDYFLIVWDFMNFARKQGIVTGPGRGSAAGSLVAYTLYITNVDP
IQYGLLFERFLNPERVSMPDIDIDFPDDRREEVIQYVANKYGQQYVAQIITFGTFGAKAA
LRDIGKVLQIDAKEMASILKHVPNKHGITIQEAYDQSAAFRQAVQSSALIKRWVATAMKV
EGLPRHTSTHAAGVIISSEPLSQIVPLQQGHGELYLTQYPMDVLERLGLLKMDFLGLRTL
TLLEHICRLIRQQTGEMIDVREIPLHDRKTYELVSEGDTNGIFQLESDGMKRVLKQLKPS
QFEDIVAVNALYRPGPIDYIPSYIRRKHGEEKAAYLHPDLAPILAPTYGVLIYQEQIMQI
AAKIAGFSLGKADLLRRAVAKKKKEILDQQRNAFIKGCMEKGYDESFANDLYDMIVRFAD
YGFNRSHAVAYSMLSYQLAYLKAHYPLYFYAALLTSVIGDEEKVALYVYEARQKRIELLP
PSVNQSRYSFSVEQGKIRYSLAAVKHVGAAAVKAIVQERKKGPFSDFFDFCVRLFGKGIN
RKTIESLVLSGCFDEFGVERAALLASIDVALEHAQLVGPYVEEGMFSDISLKPKYVEAPA
FSLEEKLMHEKELLGVYVSPHPTSAHRKMFRLAGARPVMSIIREKADRLVKAGVYIAQER
KTRTKKGEEMSFLTISDESGEMDAVAFPDVYRRYASVLKKGEVQLLEGKVEIRAGKPQFV
IRKVLAPALAAALYIKIDPEQIAAGTLFALKELLQKHHGNNPVFLYYEQEQKMVKLSEEY
NVELTDECIAALKALLGDDHIVVK
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtttgttcaccttcatgttcgcagctgctatagcctgctaacaagcccagcaaaa
atcagtgatttagtcaaaaaagcgaaagacttgcaatttcctgcgttagcattaaccgat
gaaaatgtattgtacggagcgattcctttttacatagaatgcaaacgtaacggcattcag
ccgattattgggatgatcacggacattgtgcttgaaggggaagaggcatatccgctcgtt
ttattggcaaaaaatgaaacaggctaccaacatttaatgaaaattagcagtacaattcaa
acgaaaacacgcgaaggaattcccgaaaaatggctatggcattaccgcagcggattaatt
gcgctaaccccgggaaaaagcgggcaaattgaaacattgcttgcccatggcgaaataata
aaagcaaagcaagtattagaacggtataagcaaatttttggggagaacttttacctttct
gtgcagcgcggggaaaataagcggaaagagccgtatgaacagcaattgattgcgttaggg
gaagaaacgaatacaccgcttgtggcgacgaatgacgttcaatatatcgaaaaagaagac
gcgtttgtgcaccgttgtttattggcggtaaaacaagggactgtaatagaaaccgagact
gcggcagcgggggagcggtatttaacaccgccagaagaaatgacggagcggttttccgat
ttgcctgcggcggtggaaaacagcgggaaaatcgcggaacaatgccatcttgacattgaa
tttggctcgctgaagctgccgaaatatcccgtgccgacgaaggaaagcgctgacgattat
ttgcgccgcctttgcatggaagggctgcatgaacgggtgccttctccttctgaccgttac
agggaacggctcgaatatgaacttagtgttattcggcaaatggggttcagcgactatttt
ttgatcgtttgggattttatgaatttcgccagaaaacaagggattgtcacagggcctggg
cgaggatcggcggcagggtcgcttgtagcatacacgctttatataacaaacgttgatccg
attcaatacggcctcttattcgagcggtttttaaatccggaacgtgtgtcgatgccagat
atcgatattgattttccggatgaccggcgcgaagaagtcattcaatacgttgccaataag
tacggacaacaatatgtggcgcaaatcatcacgttcggcacgttcggcgccaaggcggcc
cttcgcgacattggaaaagtgttgcagatcgatgcgaaagagatggcaagcatcctaaag
catgttcctaacaaacacggaattacgattcaagaagcatatgatcaatcggctgctttt
cgccaagcagtccagtcttccgctttgattaaacgatgggttgccacggcaatgaaagtg
gaagggcttccgcgccatacctcgacgcacgcggctggtgtgatcattagcagcgagccg
ctttcgcaaatcgttccgttgcaacaagggcatggcgaattatatttaacgcaatatccg
atggatgtgttggagcggctcggtctattaaagatggattttcttggcttgcgcacatta
acattgcttgaacatatatgccgccttattcggcagcaaacgggcgaaatgatcgatgtg
cgggagatcccgcttcatgaccgcaagacgtatgaattagtgagcgagggggacacaaat
ggaatttttcagttagagtccgatggcatgaagcgcgtgttaaaacagctaaagccgtcg
caattcgaggatatcgtggcggtgaacgcgctgtaccggccgggcccgatcgattacatc
ccttcgtatataagaagaaagcacggagaagaaaaagctgcttatcttcatccagatttg
gcgccgattttagcgccgacatacggcgtccttatttatcaagagcaaattatgcaaatt
gctgccaagatcgcgggattttcgctaggcaaagcagatttgttgcgccgggcggttgcg
aaaaagaaaaaagaaattttggatcagcagcggaatgcgtttataaaaggctgtatggaa
aaaggttatgacgaatcgtttgccaacgatctatatgatatgatcgtccgctttgccgac
tacggatttaaccggagccatgccgtcgcttatagcatgctttcttaccagcttgcctat
ttaaaagcccattacccgctttatttctacgcggcgctgttaacgagcgtgatcggcgac
gaggaaaaagtggctttatatgtttatgaagcaaggcaaaagcggatcgaattgctgccg
ccttccgtgaatcaaagccgctattctttttcggttgagcagggaaagatccgctacagt
ctggctgcggttaaacacgttggagcagcggcggtgaaagcgattgtgcaagagcggaaa
aaagggcctttctccgacttttttgatttttgtgtccgcttatttggaaagggaatcaac
cgaaaaacgatcgaatctttggttttatccggatgctttgatgaatttggcgtcgaaaga
gcggcgctgttggcgagcatagatgtcgctttagagcatgcgcagcttgtcggcccgtat
gtcgaagagggaatgttttccgatatatcgctgaagccgaaatatgttgaagctcccgcc
ttttcgctggaagaaaagttaatgcatgaaaaagaactgctcggtgtttatgtttctccg
catccaacatctgcccaccggaaaatgtttcgtttggcgggagcgcggccggtgatgagc
ataataagagaaaaagcggaccgccttgttaaagccggagtgtatattgcgcaagagaga
aagacccgcacgaaaaaaggcgaggaaatgtcatttttgacgataagcgatgaaagcggg
gaaatggacgcggttgcgtttcctgatgtatatcgccgttatgcttctgttttaaaaaaa
ggggaagtgcaattattggaaggaaaagtagagattcgtgcgggaaagccgcaattcgtt
attcgcaaagtgttggctccagcgctcgccgcggcgctttacataaaaattgatccggag
cagatcgccgctggaacattgtttgcgttaaaagagctgttgcaaaagcatcacggaaac
aatcctgtgtttttatattacgaacaagaacaaaagatggtgaagctttcggaagagtat
aatgtggaattaacggatgagtgcatcgccgcgttgaaggcgctgctaggcgatgatcat
attgtagtaaaatga
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integrated database retrieval system
