Parageobacillus thermoglucosidasius C56-YS93: Geoth_1076
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Entry
Geoth_1076 CDS
T01531
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Geoth_1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gth03400
]
Geoth_1076
Enzymes [BR:
gth01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Geoth_1076
DNA repair and recombination proteins [BR:
gth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Geoth_1076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
HHH_5
AAA_22
AAA_12
AAA_16
AAA
T2SSE
NPHP3_N
UvrD_C
NTPase_1
AAA_28
nSTAND3
AAA_17
TsaE
AAA_29
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AEH47073
LinkDB
All DBs
Position
1057962..1060316
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AA seq
784 aa
AA seq
DB search
MQQPESFVFEGTSFIKGSYISTIFHNEANLYSVVRVRVEETNEAYDEQEVVVTGYFPKMN
EHDTYIFYGKFHDHPKFGRQYVVDHFRKQFPNTKDGIIHYLSSDLFKGIGKKTAKAIVEA
LGENAISKILADPSVLDDVPKLSKQRAKELYDTLRAHEGLEQTMIALSQFGFGPQLSMKI
YQVYQDETLSVIQQNPYQLVEDVEGIGFGRADELGYRLGISGSHPARIRAACLFVIERDC
LQEGHVYVTERQLVTNIKQLLEAKRKETVSEEAIEQMLLMLSEEGKLIKEDEKFYIPSLY
FAEKGIVTNVKRLLQQTEAVMTFPESEFLLALGRLEERLSVQYAPTQKEAIRQALSSPLF
ILTGGPGTGKTTVIKGIVEIFADLHGFSLDPKDYTKDDPFPILLAAPTGRAAKRMSEATG
LPAVTIHRLLGWNGAEGFTHDEDEPISGKLLIVDEMSMVDTWLANQLFKSIPDGMQVILV
GDEDQLPSVGPGQVLKDLLQAGVIPTVRLTEVYRQAEGSSIIELAHQMKNGGLPPDLTAP
KADRSFIRCQTSQVAEVVRQIADNARRKGFAVKDIQVLAPMYRGPAGIDRLNQVLQDLFN
PKSEKKRELSVGDVIYRVGDKVLQLVNQPDDNVFNGDIGEIVAIFYAKENTEKQDLVVVS
FDGIEVTYSRQDLSQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLIICGEEEAFKLGVARSDDSSRQTTLTEKLQKILVPAVEGELPMEDANIGMENVSPYD
FMDE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
ttgcagcaaccggaatcatttgttttcgagggaacttcgtttataaaaggttcatatatt
tccaccatttttcataatgaagcgaatttgtattccgtcgttcgcgtccgggtcgaagaa
acgaacgaagcgtacgatgaacaagaagttgtggtgaccggatatttccctaaaatgaac
gagcatgacacgtatattttttacgggaaatttcatgaccatccaaagttcggccggcaa
tatgttgtcgaccatttccgcaaacaattccctaacacgaaagacggcatcattcactat
ttatccagcgatttatttaaaggaatcgggaaaaaaacggcaaaagcgatcgtcgaagcg
cttggcgaaaatgccatttccaaaattttagcggatccaagcgtgttggatgatgttcca
aaattgtcaaagcaaagggcaaaagagctgtatgatacgctgcgtgcccatgaagggctg
gaacagacgatgatcgcgctttcccagtttggttttggcccgcaattgtcgatgaaaatt
tatcaagtataccaagatgaaacactctccgttattcagcaaaacccctaccagcttgtc
gaagatgtcgaaggaatcggctttggccgcgccgacgaattaggctaccggcttggcatt
tccggcagccatcctgcgcgcattcgcgcggcgtgtttgtttgtgatagaacgggattgc
cttcaagaagggcatgtgtatgtgacagaaaggcagcttgtcacaaacattaaacagctt
ttggaagcaaaacgaaaagaaacagtcagtgaagaagcgatcgagcaaatgttgttaatg
ctttctgaagaaggaaagctaatcaaggaagatgaaaaattttatattccgtcgctttat
tttgctgaaaaaggaattgtgacaaatgtgaagcgccttttacagcaaacggaagcagtg
atgacgtttccggaatcggaatttttgctggcgctcggaaggcttgaggagcgtttatcc
gttcaatatgctcccacgcaaaaagaagcgattcgacaagcgctttcttccccgctgttt
attttgaccggaggccccggcacaggaaaaacgacagtcattaaagggattgtggaaatt
ttcgctgatttgcacggtttttccctcgatccgaaagattacacgaaagatgatccattt
ccgattttgctcgccgcgccgacgggaagggcggcaaaaagaatgagcgaagcgacgggg
ttgcctgcggtgacgattcaccgtttgcttggatggaatggggcggaaggttttacccat
gacgaggacgagccgattagcggcaaacttttaatcgttgatgaaatgtcgatggtcgat
acgtggctggccaatcagctgtttaagtcgattccggacggcatgcaagtgatccttgtc
ggggatgaagatcagctgccatctgtcggaccgggacaagtgttaaaggatttattgcaa
gcgggtgtcatcccgaccgttcggctaaccgaagtgtaccggcaagcggagggctcatcg
attatcgaattggcgcaccaaatgaaaaacgggggccttcctccggacttaactgctcca
aaggcagaccgttcattcattcgctgccagacttcacaagttgctgaagttgtccggcaa
attgccgacaatgcgcgcagaaaaggcttcgcagtgaaagacattcaagtgcttgccccg
atgtatcgcggccctgccgggatcgaccgcctcaatcaagtgctgcaagatttgtttaat
ccgaaatctgagaaaaagcgggaactttcggttggcgatgtcatatatcgggttggtgat
aaggtgctgcagcttgtcaaccaacctgatgacaatgtgtttaatggggacattggggaa
attgtcgcgattttttacgcgaaagaaaatacggagaagcaagatttagttgtcgtttct
tttgacggcatcgaggtgacatattcgcggcaagatttgtcgcaaattacgcatgcatat
tgctgttccattcataaatcgcaaggaagcgaatttccaattgtcattttgccggttgtg
aaaagctattatcgcatgttaaagcggaatttattatatacggccgtgacaagaagcaaa
caatttttaattatatgcggcgaagaagaggcgtttaaattaggggttgcccgcagtgat
gatagctcccggcaaacaacgctgacggaaaaattgcaaaaaattcttgtccctgctgtt
gaaggggagctgccgatggaagacgcgaacatcggaatggaaaacgtttcaccgtatgac
tttatggatgagtag
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