Parageobacillus thermoglucosidasius C56-YS93: Geoth_1202
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Entry
Geoth_1202 CDS
T01531
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gth03019
]
Geoth_1202
03009 Ribosome biogenesis [BR:
gth03009
]
Geoth_1202
Enzymes [BR:
gth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Geoth_1202
Messenger RNA biogenesis [BR:
gth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Geoth_1202
Ribosome biogenesis [BR:
gth03009
]
Prokaryotic type
rRNA helicases
Geoth_1202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CP_ATPgrasp_2
CMS1
DUF7117
Motif
Other DBs
NCBI-ProteinID:
AEH47197
LinkDB
All DBs
Position
1156570..1157877
Genome browser
AA seq
435 aa
AA seq
DB search
MKETLFERFSFQPFIIEAIKELRFYKPTEIQERIIPIALRGKSAIGQSQTGTGKTHAYLL
PIIEKIDPDRKAVQAVITAPTRELATQIYHEILKITKFCPSDRQITARCFIGGTDKQKAI
EKLKTQPHIVVGTPGRINDLIREQALLVRTANTLVVDEADLMLDMGFIVDVDQIAARMPK
ELQMLVFSATIPEKLKPFLKKYMENPEYVHVAPKQVAAEKIEHVLVPLRSRDKVKLLHEM
LLAYNPYLAIVFTNTKKMADEVADKLIEKGMKVGILHGDLSPRERKKMMKQIRDLEFQYI
VATDLAARGIDIEGVSHVINYELPKDLQFYIHRAGRTARAGYTGMAATIYEPSDQDAITK
LEKMGIEFLHRDLIRGEWVDLPPWNRRSKREKQGGEIAQLLAKMKKAKQVKPGYKKKLLA
EMEKQKKRLRRLKKQ
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagacattgtttgagcggttttcatttcagccatttattattgaagcgatcaag
gagcttcgtttttataaaccgacggaaattcaagagcggatcattcccatcgctctccgc
gggaaaagcgcgatcggccagtcgcaaacaggaacggggaaaacgcacgcctatttgctg
ccgatcatcgaaaaaattgatccggaccgcaaagcagtgcaagcagtgattaccgcgccg
acgcgggaacttgcaacgcaaatctaccatgaaattttaaaaattaccaagttttgtccg
agcgatcggcaaattacggcccgctgctttattggcggaaccgataagcagaaggcgatc
gagaaattgaagacacagccgcatattgtagtcgggactccgggacgaatcaatgacctt
attcgcgaacaggcgctgctcgttcgcacagcaaacacgctcgtcgtcgacgaagcggac
ttaatgctggatatgggatttattgtggacgtcgaccaaattgctgcacgcatgccgaaa
gagttgcaaatgctcgtgttttccgcgacgattccggagaagttaaagccgtttttgaaa
aaatatatggaaaatccagaatatgtccatgtcgcgccgaagcaagtggcggcggaaaaa
attgaacatgttcttgtgccgcttcgcagccgcgacaaagtgaagttgttgcatgaaatg
ttgcttgcgtataatccgtatttagcgatcgtatttaccaatacaaaaaagatggctgat
gaagtggcggacaagctgattgaaaaagggatgaaagtcgggattttgcacggcgattta
tcgccgcgcgagcgaaagaagatgatgaagcaaattcgcgatttggaatttcaatatatt
gttgctaccgatttggcggcccgcggcattgatattgaaggggtaagccatgtcattaac
tatgaattgccaaaagacttgcagttttacattcatcgcgccggacgcactgcgcgcgcc
ggctacaccggaatggcggcgacgatttacgagccgtcggaccaagatgccatcaccaaa
ttggaaaaaatggggattgagtttctgcaccgcgacctcatccgcggagaatgggtggat
ttgccgccttggaaccggcggagcaagcgggaaaagcaagggggagaaatagcgcagctg
cttgcgaaaatgaaaaaagcgaaacaagtcaagccgggctataagaaaaaactgcttgct
gaaatggaaaaacaaaaaaagcggctgcggcgcttaaaaaaacaataa
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