Parageobacillus thermoglucosidasius C56-YS93: Geoth_2641
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Entry
Geoth_2641 CDS
T01531
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Geoth_2641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gth03019
]
Geoth_2641
Messenger RNA biogenesis [BR:
gth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Geoth_2641
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Mur_ligase_C
Lactamase_B_6
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
AEH48529
LinkDB
All DBs
Position
complement(2577248..2578912)
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AA seq
554 aa
AA seq
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MRTKQVEKIRIFSLGGVGEIGKNMYVVELDDDILVIDAGVMFPEDEMLGIDKVIPDISYL
VERQDRIKAIFLTHGHEEHIGAIAYVLKKITVPVYGTKLTLGLAESILKEQGVTNAKLIE
IRSDSEIFFDKAKVTFFRTIHSIPDSVGISIHTSQGAIVYTSDFKFDQTPYGKNRADLGK
MAQIGEQGVLCLLSDSTNAERPGYTGSDTVVAQEIADVIYNAGGRVFVACYASNVTRIQQ
VLNAAKQYGRKVAVVGKTLHKVMDIAVRLGYLHLPEKVTISIHDIDRYDDKELIILTTGG
HGEPMSALARMAKQAHKQVNIKKGDTVIVAASVMPGYELIFSKTIDSLYRAGANVVYRER
KVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHANLAKAVGISEERTFLIDKGDV
IEFRNGVARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIVVVTLSKESKKII
AGPEIISRGFVYVRESETLLDEATKIVANIVNKCLQTYVIEWSSLKSNVREALSQFLFEK
TKRKPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgagaacgaaacaagtagagaaaataaggattttttcccttgggggagtcggggaaatc
ggcaagaacatgtatgtggtcgagctggatgatgacatattggtcatcgatgccggcgtc
atgttccctgaagatgagatgcttggcattgataaagtaatccccgacattagctatctc
gtggaacgccaagaccgcattaaagccatttttttaacacacggacatgaggaacatatc
ggcgctattgcttatgtgctgaaaaaaattacggtgccagtgtacggaacgaagcttacg
ttaggattggcagaatcgattttaaaggaacaaggagttacaaacgcaaaactgatcgaa
attcgctccgactcggaaattttctttgataaggcgaaagtgacgtttttccggacgatt
cacagcattcctgattcggttggaattagcattcatacgtcccaaggcgccatcgtttat
acgagcgactttaaatttgaccagactccatacggcaaaaaccgggcggatttaggaaaa
atggcgcaaattggtgaacaaggagtgctttgcttattatccgatagcacaaacgcggaa
agaccgggatatacgggatcggatacggttgttgcccaggaaattgccgatgtgatctat
aatgcgggcggccgggtgtttgttgcttgttatgcgtcaaacgttacaagaattcaacaa
gtgttgaatgcggcaaagcagtacggacggaaagttgccgttgtgggaaaaacgctgcat
aaagtgatggatattgctgttcggctaggatatttacatcttcctgaaaaagtgactatt
tccattcatgacattgaccgctatgatgataaagaattgattattttgacgaccggcggg
catggcgagccgatgagcgcattggcccgcatggcaaaacaagcgcataagcaagtcaac
atcaaaaaaggggataccgtcatcgttgcggcatcggtgatgccaggatatgaattaatt
ttttccaaaacgattgattcgttgtatcgcgccggagcgaatgtcgtttaccgcgagaga
aaagtgcatgtttcgggacacggatgtcaggaagaattaaagttaatgcttaatttgatg
aaaccgaaatattttattcctgttcacggcgaatatcggatgcaaaaggcgcacgccaat
cttgcgaaagcggttggcatctctgaagaaagaacatttttgatcgacaaaggggatgtc
attgagtttcgcaacggtgtagctcgtcctggcggaaaagttccgtacggcaacatttta
attgacggtcttggcattggcgatgttggtaacatcgttttaagagatcggcgtctcctc
tcgcaagatgggattttaatcgttgttgtcacattaagcaaagaatcgaaaaaaattatc
gcagggccggagattatttcgcgcggttttgtctatgtaagagaatccgaaacattgctt
gatgaagcgacgaaaatcgtagcaaatatcgtgaataaatgtttgcaaacttatgtgatc
gaatggtcttcgctaaaatccaacgttcgcgaagcattgagccaatttttatttgaaaaa
acaaaacgcaaaccaatgattttgccgattattatggaagtataa
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