Parageobacillus thermoglucosidasius C56-YS93: Geoth_2868
Help
Entry
Geoth_2868 CDS
T01531
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Geoth_2868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gth03019
]
Geoth_2868
Messenger RNA biogenesis [BR:
gth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Geoth_2868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AEH48755
LinkDB
All DBs
Position
2794790..2796457
Genome browser
AA seq
555 aa
AA seq
DB search
MKFLNDHQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYTYL
VKNAEKVKGLFITHGHEDHIGGIPYLLKQINIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFRKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVQGRIIFATFASNIHRLQQ
VTEAAVMNNRKIAVFGRSMEAAIEIGQELGYIRCPKDTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGLSENDARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKDFKI
AAGPDIISRGFVYMRESGDLISDAQALITKHLEKVLERKTNQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttttaaatgatcatcaagttggcgtatttgccctcggcggattgggagaaatc
gggaaaaatacatatggcgtgcaatttcaagatgaaattattgtaatcgacgccggaatt
aaattccctgaagatgagttgctcggaattgattacgtcattcccgattacacgtattta
gtcaaaaatgcggaaaaagtaaaaggattgtttattactcacgggcatgaagaccatatc
ggtggaattccatacttgctaaagcaaataaatattccaatctacggcggaaaattagcg
ttagggcttatccgcaacaagctggaggagcacgggcttcttcggcaagcgaaactgatt
gaaattcgcgaagacgatgtcatccgcttccgaaaaacagcggtgacatttttccggacg
acgcacagcattcctgacagttacggaattgttgtgaaaactcctgtaggacaaatcgtt
catacgggagatttcaaatttgacttcactcctgtcggtgagccggcaaacttaacaaaa
atggcggaaatcggcaaagaaggtgtcctttgtttgctttccgacagcacaaatagtgaa
atcccgcacttcaccatgtccgagcgccgcgtcggcgaaagcattcatgacattttccgg
aaagtgcaaggacggattatttttgcgacatttgcttccaatatccaccggctgcagcaa
gtaacggaagcggctgtaatgaataaccggaaaatcgctgtatttggaagaagcatggaa
gcagccattgaaatcggacaagagctcggttacattagatgtcctaaagatacttttgtg
gacgccaatgaaatcaaccgccttcctgccaaccgcgtgacgattttatgtactggcagc
caaggcgagccgatggcggcgctgtcgcgcattgccaacggcacccaccggcaaattcaa
attatccctggcgacaccgtcgtcttttcttcatcgccgattccgggcaatacggtaagc
gttaatcggacgattaatatgctttaccgcgccggcgctgaagtcattcatggcccgctg
aacgatattcacacatccgggcatggcgggcaagaagagcagaagctgatgatccgcttg
atgaaaccgaaatattttatgccgattcacggagagtaccgcatgcaaaaaatgcacgcg
aagctcgcgatagattgcggagtgccggaggaaaattgttttatcatggataacggtgaa
gtgcttggcctcagcgaaaacgacgcccgcatcgtcggcaaaatcccgtccggctctgtt
tatattgacggcagcggtgtcggcgacatcggtaacatcgtcttgcgcgaccgccgcatt
ttgtcagaggaagggcttgtcatcgtcgttgtcagcatcaatatgaaagatttcaaaatc
gcggccggcccggatattatttcgcgcgggtttgtgtatatgcgcgaatccggtgattta
atcagcgacgcacaagcgctcattacgaaacaccttgaaaaagtgctcgaacgcaaaaca
aaccagtggtcggaaataaaaaatgaaattaccgatacgcttgctccgtttttatatgaa
aaaacgaagcggagaccgatgattttaccaattattatggaaatataa
DBGET
integrated database retrieval system
