Parageobacillus thermoglucosidasius C56-YS93: Geoth_3270
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Entry
Geoth_3270 CDS
T01531
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03410
Base excision repair
gth03430
Mismatch repair
gth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Geoth_3270
03430 Mismatch repair
Geoth_3270
03440 Homologous recombination
Geoth_3270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gth03400
]
Geoth_3270
DNA repair and recombination proteins [BR:
gth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Geoth_3270
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Geoth_3270
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Geoth_3270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
AEH49139
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Position
3180431..3182092
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AA seq
553 aa
AA seq
DB search
MDWIPFDTPLEKHPNKALITYMARQFDIEPVLMHHLFIYGIDNCEKVSRFLFPTIDDFHD
PFLMNDMKKAIIRIIKALIQKEKILIYGDYDVDGMTATAILYKALKKFKADVHYRLPLRS
EGYGLSPKAMEKVPEDVSLIITVDNGSSAHPAMEVAKRRGMDVIVTDHHEVLGPHPDCYA
FINPRRHDNTYPFPHLAGAGVALKVVQALFMAGKIPWDKHVYEFIEFATLGTIADLMPLK
GENRIICKLGLQKMNYTPTPVLKKLFEMLRIKYVDSSTISFQIGPIFNSSGRIDDPNQAV
DILINPSCTKADLYPLITLNKKRQQMTKDQFQRIEEQIIQNQWYKQNVIVVYDDFHSGII
GLIAAKIANKFKKPAIVISLTGAGSARSVNSTDFSIINVIKKCSYFLTKYGGHRAAAGFS
IKPDLDHIHAFREAIQLAALDEPPLNPKLKYISTIPLHQFPMHIFDDLSVLEPFGMSFPK
PLFYCSLLAIKQFQTFGKNNEHLKLTTNDKEAIAFFRGEMANELQQQLLAEFLYTPNCPM
KKDFLIHDLRFIK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggattggataccgtttgatacaccactagaaaaacatccaaataaagctttaatcacc
tatatggcaagacagtttgatatcgaacctgtactgatgcaccacttgtttatttacggc
atcgacaattgcgaaaaagtatcacgattcttatttccgactatagatgattttcatgat
ccatttctcatgaatgacatgaaaaaagcgattatacgcattattaaagctttgatacaa
aaagaaaaaattctgatttatggtgattatgatgtagatggaatgacagcaacggctatc
ctgtacaaagctttaaagaaatttaaagcagatgtccattatcgattgccgcttcgcagt
gaagggtacggtttgtcaccaaaagcaatggaaaaagttccggaagatgtctctttaatt
attacagtagacaatggatcaagcgcccaccctgccatggaagtggcaaaaagaagagga
atggatgtcattgttacggatcatcacgaagttttaggtccgcatcccgactgttatgcg
tttattaatccgcggcgccatgacaacacttatcctttcccgcatctagcaggtgcggga
gtcgctttaaaagttgtgcaagcactatttatggcaggaaaaattccgtgggataagcat
gtttacgaatttattgagtttgcgacgttaggtacgattgcggatctaatgcctctcaaa
ggagaaaatcgtattatttgtaaacttggattgcagaaaatgaactatacaccaacccct
gtattaaaaaaactctttgagatgttacgaattaaatatgtcgatagttccaccattagc
tttcaaattggaccgatttttaactcgtcgggacgaattgatgatccaaaccaagctgtc
gatattctaatcaatccttcatgtacaaaagcagatctttacccattaattactttaaat
aagaagcggcaacaaatgacgaaagaccaattccaacgtattgaggaacaaattattcaa
aaccaatggtacaaacaaaatgttattgttgtttacgatgattttcacagcggaattatc
ggtctcattgccgcaaaaatagcaaacaaattcaaaaaaccagcgattgtgatttccttg
acaggagccggttctgccagaagtgtaaatagtacagatttctccatcattaatgtgatt
aagaaatgctcctatttcctaaccaaatacggtggtcatcgagccgctgctggtttttcg
attaaacccgatttagatcatatccatgcttttagagaagcgattcaactagcagcctta
gacgaaccgccactaaatccaaaattaaaatatattagtacaattcccttacatcagttc
cctatgcatatttttgatgacttaagcgtgttagaaccgttcggaatgtcatttccaaag
ccgttgttttactgctcactgctggcaatcaagcagtttcaaacattcggtaaaaacaat
gaacacttaaaattaacgacaaatgataaagaagcgatcgctttctttagaggagaaatg
gcaaacgaactccaacaacaattgttagctgaatttctttacactcctaactgtccgatg
aaaaaagattttttaattcatgatcttcgtttcatcaaataa
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