Geobacillus thermoleovorans KCTC 3570: GT3570_06035
Help
Entry
GT3570_06035 CDS
T04710
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gtk
Geobacillus thermoleovorans KCTC 3570
Pathway
gtk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT3570_06035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtk03019
]
GT3570_06035
Messenger RNA biogenesis [BR:
gtk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GT3570_06035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Mur_ligase_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AMV10508
UniProt:
A0A1C3D8T5
LinkDB
All DBs
Position
1187699..1189369
Genome browser
AA seq
556 aa
AA seq
DB search
MKSKIKPVEKIRIFALGGVGEIGKNMYVVELDEDIFVIDAGVMFPEDEMLGIDKVIPDIT
YLIERQHRIQAIFLTHGHEEHMGAIAYVLKQLSVPVYGTKLTLGLAEALLKEQGVSGAKL
NEVHPDAELVFDKAKVTFFRTIHSIPDSIGISLHTSQGAIVYTSDFKFDQTPYGNNRTDL
GKMAQIGEEGVLCLLSDSTNAERPGYSGSDTVVAYEIADVIGHAKGRVFVACYASNITRI
QQVLYAAHQSGRKVAVIGKTLHKVMDIAVRLGYLHVPDKVTISAHDIDRYNDRELVILTT
GGHGEPMSALWRMARQANKQVNIKEGDTVIVAASVMPGYELGFAKTIDALYRAGANVIYR
DRQVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHARLAKAVGISEERTFLIDKG
EVIEFRGGAARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIAVVTLNKEAKT
IAAGPEIISRGFVYMRESETLLEEAEKMVAAIIERCLESYMLEWSSLKANIREALSQFLF
EKTKRRPMILPIIMEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcgaaaataaagccggtagagaaaatacgcatttttgcccttgggggagtcgga
gaaatcggcaaaaacatgtatgttgtcgaattggacgaggacatttttgtcatcgacgcc
ggggtgatgtttccggaagacgaaatgctcggcatcgacaaagtgatcccggacatcacg
tatttgattgaacggcagcatcgcattcaggcaatttttctcacccacgggcacgaggag
catatgggggcgatcgcctacgtgctcaagcagctgtctgtgccggtatacggaacgaag
ctgacgctcgggttggcggaggcgctgttaaaagaacaaggggtgtcgggcgcgaagctc
aatgaagttcatccggatgcggagctcgtgtttgacaaggcgaaagtgacgtttttccgc
acgatccacagcatccccgattcgatcggcatcagtctgcatacatcgcaaggtgcgatc
gtgtacacgagcgattttaaatttgaccaaaccccgtacggcaacaaccgcaccgactta
gggaaaatggcgcaaatcggcgaagaaggggtgctgtgtcttttgtcggacagcacaaac
gccgaacgccccggctacagcggctccgatacggtagtcgcctatgagatcgctgacgtg
atcggccatgcgaaaggacgcgtgtttgttgcctgctacgcttccaacatcacccgcatc
cagcaagtgctgtacgccgcccaccaatccgggcgtaaagtggcagtcatcggcaaaacg
ctgcataaagtaatggacatcgccgtgcgccttggctatttgcatgttccagacaaggtg
acgatttctgcgcacgatatcgatcgctacaatgaccgcgagctcgtcattttgacaacc
ggcgggcatggcgagccgatgagcgcgctttggcgcatggcgcgtcaagcgaacaaacaa
gtgaacatcaaagaaggggataccgtcatcgtcgccgcatccgtcatgccgggctatgag
cttgggttcgcgaaaacgatcgacgccttgtatcgggccggcgccaacgtgatttaccgc
gaccggcaagtgcacgtatctgggcacggttgccaagaagaattaaagttgatgctcaat
ttaatgaagccaaaatactttattccggtgcatggggaatatcggatgcaaaaagcgcac
gcccggttggcgaaggcggtcggcatctcggaggagcggacgtttttaatcgacaaaggc
gaagtgatcgagttccgcggcggtgccgcccgccctggcggcaaagtgccgtacggcaat
attttaattgatggcctcggcattggcgatgtcggcaacattgtgttgcgtgaccgccgc
ttattgtcccaggacggcattttgatcgccgtcgtcacgctgaataaagaagcgaaaacg
atcgccgccggcccggaaatcatttcgcgggggttcgtctacatgcgcgagtctgagaca
ctgcttgaggaagcagagaaaatggtggcggcaatcatcgagcgctgccttgaatcgtac
atgcttgaatggtcgtcgttgaaagcgaacatccgtgaagcgttaagccagtttttattt
gaaaaaacgaagcgcagaccaatgattttgcctattattatggaagtataa
DBGET
integrated database retrieval system
