Geobacillus thermoleovorans KCTC 3570: GT3570_13370
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Entry
GT3570_13370 CDS
T04710
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gtk
Geobacillus thermoleovorans KCTC 3570
Pathway
gtk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gtk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GT3570_13370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gtk03400
]
GT3570_13370
Enzymes [BR:
gtk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GT3570_13370
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GT3570_13370
DNA repair and recombination proteins [BR:
gtk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GT3570_13370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DZR_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AMV11916
LinkDB
All DBs
Position
complement(2642895..2643719)
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDPEEFAARMIGQTVRGLERRGK
FLKFLLDRDALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVY
AKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDES
LFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLY
VYGRQGSPCKRCGTPIEKTVVAGRGTHYCPRCQR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccggaggtggaaacgatccgtcgtacgcttttgccgcttattgtcgga
aaaacgattgaggatgtgcgcatcttttggccgaacatcatccgccatccgcgagacccc
gaggagtttgcggcaagaatgatcggacagacggtgcgtggtttggaacggagagggaag
tttttgaaattcctgctcgaccgcgatgcactcatttcccatttgcgcatggaagggcgc
tacgccgttgcttctgccctcgagccgctcgaaccgcatacgcacgtcgtgttttgcttc
acggacggcagcgaactccgttaccgcgacgtgcgcaagttcggaacgatgcacgtttat
gccaaagaagaagctgaccgtcggccgccgcttgctgagcttgggccggagccgctttcc
ccggcgttttccccagctgtattggcggagcgggcggtgaaaacgaaacggtcggtcaaa
gcgttgctccttgatcagacggtcgtggctgggtttggcaatatttatgtcgacgaatcg
ctgtttcgcgccggcattcttcccggccggccggccgcttctctctccagcaaagagatc
gagcgcctgcatgaggaaatggtggcgacgatcggcgaggcggtcatgaaagggggaagc
acggtgcgcacgtatgtgaacacgcaaggcgaggccggcacgtttcaacatcatttgtac
gtgtatggccgccaaggcagtccgtgcaaacgatgcggcacgccgattgaaaaaacggtc
gtcgccggccgcggcacgcattattgcccgcgctgccagcgctag
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